Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq1955 111 1e-19 >seq2 Length=528078 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114175 CTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAA 114234 ||| ||| | || ||||| ||||||||||| |||||| || || | || || | Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 114235 GTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAA 114294 | |||||||||||| | ||||| ||||||||||| |||||||| || || || || || Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 114295 TCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGC 114354 | || || | | || | |||||| | || || || || | ||| | ||| || | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 114355 CGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| |||||||| ||||| |||||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCAT 318162 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||| || || ||||| | ||| ||| || ||||| || || || Sbjct 317169 GTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTCAAGCTGCTTGCCC 317228 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||||||||| || || |||||||| || || ||||| || Sbjct 317229 GCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGGATCTTCGCCTTC 317288 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | ||| ||||| || | ||| | ||| || ||||| || ||| Sbjct 317289 ACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTCCCGGTGAGCGTT 317348 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 317349 TTCACAAAGATCTGCAT 317365 >seq1955 Length=526780 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || ||||| || ||||||||||| Sbjct 128540 ATACCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCC 128481 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| || || || || || ||||| ||||||||||||| || || ||| Sbjct 128480 GAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGA 128421 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| || || || | | |||| ||||| | ||| ||| Sbjct 128420 GGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCG 128361 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| || ||||| || || |||||||||||| Sbjct 128360 ACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | ||| | || || ||||| ||||| ||||| || Sbjct 127803 ATACCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCC 127744 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || || || ||||| ||||||| ||||| ||||| ||| Sbjct 127743 GAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGA 127684 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | ||||||| || ||| Sbjct 127683 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCG 127624 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || ||||| || ||||| || |||||| Sbjct 127623 ACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATG 127573 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| || ||||| || | ||||| ||| || |||||||| ||| Sbjct 127998 GTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGTTTGCCA 127939 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| ||||| |||||||| |||||||||||||| ||||| ||||| || Sbjct 127938 GCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 127879 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || || || |||| || | || ||||| || || || Sbjct 127878 ACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGGGTC 127819 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 127818 TTGACAAAGATCTGCAT 127802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || || ||||| || ||||| || || ||||| || ||| Sbjct 127487 GTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCA 127428 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | |||||||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 127427 GCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTG 127368 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | || ||||| || | ||| | || |||||||||| || Sbjct 127367 ACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTC 127308 Query 114366 TTTACAAAAATCTGCATGGCTTAA 114389 || ||||| || |||||| |||| Sbjct 127307 TTGACAAAGATTTGCATGATTTAA 127284 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || || ||| || || || || || Sbjct 128226 GTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCG 128167 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| || || || || |||||||||||||| ||||| |||||| || Sbjct 128166 GCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTG 128107 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | |||||||| || | || | || || || |||| || Sbjct 128106 ACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTC 128047 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 128046 TTGACGAAGATTTGCAT 128030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | ||| || || || | || || ||||| |||||||||||| Sbjct 128765 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAA 128706 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| || || || || || |||| | ||||| ||||| || || Sbjct 128705 AGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGG 128646 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || || || |||||| || | | |||| ||||| | ||| ||||| Sbjct 128645 ATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACT 128586 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || |||||||| || || || || ||||||||||| Sbjct 128585 TCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420123826398780