Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 150 4e-31 seq1955 131 4e-25 seq1901 91.5 3e-13 seq1724 91.5 3e-13 seq258 87.8 4e-12 >seq2 Length=528078 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||||||||| || | || ||||| ||||| || | || || || |||||| Sbjct 317175 TCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAG 317234 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||||| | |||||| ||||| ||||||||||| ||||| |||||||| Sbjct 317235 ATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGGATCTTCGCCTTCACGTTG 317294 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||||||||||||||| || || || || Sbjct 317295 TCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACA 317354 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 317355 AAGATCTGCAT 317365 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 317367 CCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGAC 317426 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||| || | ||| || || |||||||| || ||||| || | ||| Sbjct 317427 AATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 317486 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || |||||||| || || || || | ||| |||||| || Sbjct 317487 ATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACC 317546 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||||| |||||||||||| |||||||| Sbjct 317547 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||||||||| | ||| ||||| |||||||| | || || || || ||| Sbjct 317694 TCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCAGCAAAG 317753 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | || || || || |||||||| || || || || || || Sbjct 317754 ATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTTGACATTG 317813 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| |||||| || ||||| || || ||||| || |||| ||||||||| Sbjct 317814 TCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTCTTGACA 317873 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 317874 AAGATCTGCATT 317885 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||| | ||| ||| ||||| || ||||| |||| | || | ||||| || | Sbjct 317957 AGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGC 318016 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 ||||| || ||||| || || |||||||| || ||||| || ||||| || ||| Sbjct 318017 TGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATT 318076 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | || || || || ||||| ||||||||||| ||| Sbjct 318077 TTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCG 318136 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| |||||||||||| Sbjct 318137 GTGAGAGTTTTGACAAATATCTGCATT 318163 >seq1955 Length=526780 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| |||||||| | || ||||| || ||||| ||||| | | Sbjct 127800 CCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAG 127741 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| || | || Sbjct 127740 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGA 127681 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||| ||| || ||| Sbjct 127680 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACT 127621 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct 127620 TCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| || || ||||| || | || ||||| || ||| Sbjct 128501 TCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 128442 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| || || || |||||||||||||| || ||||| Sbjct 128441 ATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTG 128382 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || || |||||||||||| Sbjct 128381 TCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACG 128322 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 128321 AAAATCTGCAT 128311 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||||| || |||||||| || || |||| || ||||| || ||||| | || Sbjct 128741 TGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCTTCGAGCTGC 128682 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| ||||| || ||||||||| || ||||| || || ||| Sbjct 128681 TTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGAATCTTC 128622 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | || || || ||||| | ||| || ||||| ||||| Sbjct 128621 GCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTCTTGCCGGTA 128562 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 128561 AGCGTCTTGACGAAAATCTGCAT 128539 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || || | || || ||||||||||| ||||| | Sbjct 128028 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAA 127969 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | |||||| || || ||||| ||||| ||||| || Sbjct 127968 AGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGA 127909 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || ||||| || || || | || || || || Sbjct 127908 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACC 127849 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||| ||||| || || || |||||||| || |||||||| Sbjct 127848 TCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | |||||| || || || | || || || || || Sbjct 128221 TTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 128162 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || || || ||| || || ||||| || ||||| || || || || ||||| Sbjct 128161 GATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGACGTT 128102 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| || ||||| ||||| |||||||| |||| |||||||| Sbjct 128101 GTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTCTTGAC 128042 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 128041 GAAGATTTGCAT 128030 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||||||||| || | | ||| || ||||| || | ||| || || ||||| Sbjct 127481 TCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAA 127422 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || || || || || || || ||||| || || || ||||| Sbjct 127421 ATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG 127362 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || ||||| ||||| ||||| ||||||| |||||||| Sbjct 127361 TCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACA 127302 Query 288463 AATATCTGCATTAT 288476 || || ||||| || Sbjct 127301 AAGATTTGCATGAT 127288 >seq1901 Length=11604 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| || || || || || || || || |||| |||| ||||| Sbjct 8407 GGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATAGTATCGGAAGATTCC 8466 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || ||||||||||||||||| Sbjct 8467 ACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCAT 8516 >seq1724 Length=14637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| || || || || || || || || |||| |||| ||||| Sbjct 11432 GGGATACCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATAGTATCGGAAGATTCC 11491 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || ||||||||||||||||| Sbjct 11492 ACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCAT 11541 >seq258 Length=89307 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| || | || ||||| | ||| |||| ||||| |||||||||||||| Sbjct 85750 CCGCCTCGGAGACTCTGGACAAGATGGAGCGTTGTTTCCTTTTGAATATTATAGTCGGCC 85691 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTG-TTGAGAATCTGG 288365 ||||| || |||||||| || ||||| || || || |||| | || | | ||| | || Sbjct 85690 AGCGTTCGCCCGTCTTCCAACTGTTTCCCGGCAAATATCAACCTTTGCTCGTGAA-CAGG 85632 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 || |||||||| || || || | | |||||| ||||| Sbjct 85631 GAAACCTTCTTTGTCTTGAATCAACCCCTTCACGGCGTCTAT 85590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179623188925070