Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1955 122 9e-23 seq2 118 1e-21 >seq1955 Length=526780 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||||||||| || | ||||| || | || || |||||||| ||||| || Sbjct 127765 CTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 127706 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 127705 GATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 127646 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||||| ||| || || |||| ||||| || ||||| || || ||||| || Sbjct 127645 ATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGAC 127586 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 127585 AAAGATTTGCAT 127574 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||| ||||||| || || || |||| || || ||||| |||||||| Sbjct 127482 CTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAA 127423 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || |||||||||| || | || ||||||||| ||| || |||| ||| Sbjct 127422 AATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 127364 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || ||| || || |||| ||||| || ||||| || | ||||| | Sbjct 127363 TGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGA 127304 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 127303 CAAAGATTTGCAT 127291 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | |||||| ||||| || | |||||||||||||| || |||||||| | Sbjct 128765 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAA 128706 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || || || || | |||||||||||||| ||| Sbjct 128705 AGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGG 128646 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| | | ||| | || | || | | | | |||||| || || || Sbjct 128645 ATTCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGAC 128587 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||| || || ||||| || |||||||| || || || ||||| Sbjct 128586 TTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || |||||||| || || || Sbjct 128220 TCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 128161 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 ||||| || ||||| |||| || | || ||||||||| ||| | || | |||| ||| Sbjct 128160 ATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTGA-CGT 128103 Query 42137 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || | |||| ||||| || |||| ||||| || || || || | ||||| | Sbjct 128102 TGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTCTTGA 128043 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 128042 CGAAGATTTGCAT 128030 >seq2 Length=528078 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||| || |||| || || || |||| || |||||||| ||||| || Sbjct 317693 CTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCAGCAAA 317752 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | | |||||| ||| ||| | |||| |||| Sbjct 317753 GATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCC-TGAATCTTTGCCTTGACAT 317811 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| |||||| || |||| || ||||| |||||||| | ||||| | Sbjct 317812 TGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTCTTGA 317871 Query 42196 CAAAGATTTGCATT 42209 ||||||| |||||| Sbjct 317872 CAAAGATCTGCATT 317885 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||| ||||||||||| || ||||| | || || | | |||| || ||||| Sbjct 317959 ATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTG 318018 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||||||||| ||||| ||||| ||||||| || | | |||||| | | ||| ||| Sbjct 318019 TTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTAT-CTTGAATTT 318077 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | |||| | | | ||||| || ||||| |||| ||||| || || || | Sbjct 318078 TGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGG 318137 Query 42184 TTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | || || || ||||| || |||||| || Sbjct 318138 TGAGAGTTTTGACAAATATCTGCATTCTC 318166 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| || ||||||||| |||||||| |||| || |||| |||| || || || Sbjct 317390 ATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCAAGTTG 317449 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || ||||| ||||| ||||||||||| | || | || ||||||||| ||| | | Sbjct 317450 CTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC-TGAATCT 317508 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | ||||| | | | || || |||||| || || | || || || || || | Sbjct 317509 TCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTTCCGG 317568 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | | ||||| || ||||| ||||| Sbjct 317569 TCAAAGTCTTGACGAAGATCTGCAT 317593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543198778319600