Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 seq1955 118 1e-21 >seq2 Length=528078 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64236 CTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAA 64295 ||||||| | || ||||| ||||||||||| ||||| | | ||| | | |||| || | Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 64296 GCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTA 64355 |||| || || || ||||||| ||||| ||||||||||||||||| || || ||||| | Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415 |||| ||| ||| || | || ||| | ||||| || | || | ||||| | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | |||||| || || || |||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCATT 318163 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || ||||| | |||||| || ||||| || ||||| || | Sbjct 317366 ACCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGA 317425 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | |||| ||||| ||||| ||||| | ||||||||||||||||| ||||| Sbjct 317426 CAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGG 317485 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || ||||| || || || | | || ||||| ||| || | |||||| | || | Sbjct 317486 GATGCCTTCCTTGTCCTG-AATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGA 317544 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | ||||| ||||||||||| || ||||| || ||||| Sbjct 317545 CCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| || || || || || || || || || | || |||||| ||||||| ||| Sbjct 317679 AGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGC 317738 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | ||||||||||||||||| |||||||| || || || || || || Sbjct 317739 TGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATC 317798 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 ||| ||| ||| || | || || | || || || | || | ||||||||| Sbjct 317799 TTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCC 317858 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| || || || || |||||| Sbjct 317859 GTCAAAGTCTTGACAAAGATCTGCATT 317885 >seq1955 Length=526780 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| || ||||| | ||||| ||||| ||||| ||||| || | Sbjct 127801 ACCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGA 127742 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || ||||||||||| ||| | ||||| ||||||||||| ||||| Sbjct 127741 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGG 127682 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| || || | || || | || || Sbjct 127681 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGAC 127622 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||||| || | ||| || || || |||||||| Sbjct 127621 TTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || || || | ||||| ||||| || ||||||||||| | Sbjct 128538 ACCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 128479 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||| || |||||||| || ||| | ||||| |||||||| |||||||| Sbjct 128478 GAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGG 128419 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || ||||| ||| || || | || ||| || || || Sbjct 128418 GATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGAC 128359 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||| || |||||||| ||||| Sbjct 128358 CTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| ||||||||||| | | ||||||| | ||||| ||||||||||||||| | Sbjct 128729 TCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAG 128670 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | |||||||||||||| || ||||| || || ||||| || || ||| || Sbjct 128669 ATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 128610 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || ||||| | || | ||||||||||| | || || ||| Sbjct 128609 TCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACG 128550 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 128549 AAAATCTGCAT 128539 Score = 105 bits (116), Expect = 7e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| |||||||| || || |||||||| || | | ||||| | || || ||| Sbjct 128235 AGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGC 128176 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||||||| | ||||| || ||||| ||||||||||| ||||| || || || || Sbjct 128175 TGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATC 128116 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || || | || || || | ||| | ||||| || Sbjct 128115 TTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCA 128056 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| |||||||| Sbjct 128055 GTCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || || ||||| | | || || |||| || || |||||||| Sbjct 127487 GTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCA 127428 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || ||||||||||||||||| || || || ||||| || || ||| Sbjct 127427 GCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTG 127368 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 || || | |||| ||| || || || || | || | |||||||||||||| | Sbjct 127367 ACGTTGTCGATGGTAT--CCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGG 127310 Query 64425 TTTTTACGAAAATTTGCAT--TTTAA 64448 | || || || |||||||| ||||| Sbjct 127309 TCTTGACAAAGATTTGCATGATTTAA 127284 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||| || || || | ||||| || ||||| || ||||| || | Sbjct 128028 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAA 127969 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | || || || || ||||| ||| | || || || || |||||||||||| Sbjct 127968 AGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGA 127909 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||| ||| || | ||| || | || || Sbjct 127908 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACC 127849 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || || || || ||||| Sbjct 127848 TCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499631902918600