Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 122 9e-23 seq1955 107 2e-18 >seq2 Length=528078 Score = 122 bits (134), Expect = 9e-23 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 138407 CTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGA 138466 ||| ||| | | | || |||||||||||||| || ||| || || | | |||||||| Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 138467 GTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGA 138526 | |||||||| | | || || ||||||||||| ||||| || || || || || ||| Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATC-TTGA 318073 Query 138527 TTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||| | || |||| || | |||||| | ||||||||||||| || | ||| || Sbjct 318074 ATTTTGGCCTTGACATTG-TCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTT 318132 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||| ||||| |||||||| Sbjct 318133 TCCGGTGAGAGTTTTGACAAATATCTGCAT 318162 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || |||||||| || || | |||||| ||||| || |||| Sbjct 317400 GACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCG 317459 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| || ||||| ||||| ||||| || ||||| ||||| ||| | || | ||| Sbjct 317460 AAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC-CTGAATCTTCGCTTTGAC 317518 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||| || ||||| | || | || || || |||| ||| | Sbjct 317519 ATTG-TCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCT 317577 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 317578 TGACGAAGATCTGCATG 317594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || || || | ||| | || || || | | ||||||| ||||| || || || || Sbjct 317135 GCATCCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATC 317194 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | ||| || |||||| || || || || | |||| | ||||||||||| || Sbjct 317195 CGAAAGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGG 317254 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || ||||| || || ||| || || | | || | |||||| | ||||| Sbjct 317255 TGGGATGCCTTCCTTATCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTC 317314 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||| || || || || ||||| ||||| |||||||| Sbjct 317315 GACCTCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 >seq1955 Length=526780 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | ||||||||||| || |||||||| Sbjct 128028 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAA 127969 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||||||||| || | | |||| ||||| |||||||| ||||| Sbjct 127968 AGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGA 127909 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | |||| || | ||||| | ||||| || Sbjct 127908 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTG-TCGATTGTGTCCGAAGACTCAAC 127850 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || || || || || || ||||| |||||||| Sbjct 127849 CTCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | ||||| || || |||||||| || Sbjct 128537 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAG 128478 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||| || || || | | |||| |||||||| || || ||||| Sbjct 128477 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 128418 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | || | ||||| | ||||| ||| Sbjct 128417 ATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACC 128358 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || || || || ||||| || || |||||||||||| Sbjct 128357 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| || || || |||||||| || || |||| | Sbjct 128223 GATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 128164 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || || ||||| || ||||| ||||| ||| | || | || | Sbjct 128163 AAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTTGAC 128105 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | || || ||||||| || | || || ||||||| || | Sbjct 128104 GTTG-TCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTCT 128046 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 128045 TGACGAAGATTTGCAT 128030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249590226800