Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq1955 98.7 9e-16 >seq2 Length=528078 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 CTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCA 45192 ||||||||| || ||||||||||| || ||||||||| | |||| | || || | Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 ||||| || ||| | || | || || ||||| || ||||| || || |||||||||| Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 45253 TTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGC 45312 |||| |||| || | |||||| |||||||| || ||||| || | ||| || | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 45313 CGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| |||||||| ||||| || ||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCAT 318162 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | | ||| | || || ||||| || ||||||||||||||||| Sbjct 317138 TCCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGA 317197 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || | || || | || || || ||| | |||||||| || ||||| || || Sbjct 317198 AAGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGG 317257 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||||| ||||| || || || || | || | || | |||||| || ||||||| Sbjct 317258 GATGCCTTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCAATGGTGTCAGAGGACTCGA 317316 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | ||| || ||||| || ||||| ||||| || ||||| Sbjct 317317 CCTCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || ||||||| ||| || |||||||||||||| || || Sbjct 317364 ATACCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCA 317423 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | ||| || || ||| | || | || |||||||| || Sbjct 317424 GACAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGA 317483 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || ||||| || ||||| || | ||| || || || ||| Sbjct 317484 GGGATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCG 317543 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || ||||| | ||| || || || || ||||| Sbjct 317544 ACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || || || || || ||||| ||||||||||| || || ||| || || | Sbjct 317679 AGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGC 317738 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || || | || | || |||||||| || ||||| || || ||||| ||||| Sbjct 317739 TGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATC 317798 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 ||| |||| || | |||||||| || ||||| ||||| |||| || ||||| Sbjct 317799 TTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCC 317858 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || | ||| || ||||| || ||||| ||| || || Sbjct 317859 GTCAAAGTCTTGACAAAGATCTGCATTCCGCCACGAA 317895 >seq1955 Length=526780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| ||||| | ||| || | || || || ||||||||||| || |||||| Sbjct 128765 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAA 128706 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || || | |||||||| |||||||| || || Sbjct 128705 AGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGG 128646 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||||||||| || || | || | || | ||||| || |||||||| Sbjct 128645 ATTCCCTCCTTATCTTGAATCTTCGCCTTCA-CGTTATCAATCGTGTCCGAGGACTCGAC 128587 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| | |||| || |||||||| || || || || ||||| ||||| ||| || Sbjct 128586 TTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCATACCGCCAC 128531 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 || |||||||| || ||||||||||| || || || || || |||| || | || | Sbjct 127698 CGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTATCGAT 127640 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||||| ||||||||||||||||| | || ||||| || ||||| || ||||| || Sbjct 127639 CGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGAT 127580 Query 45335 TTGCATCGCGCGAC 45348 |||||| ||| || Sbjct 127579 TTGCATGCCGCCAC 127566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/211 (71%), Gaps = 10/211 (5%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCC-- 45191 || || || || || ||||| |||||||||||||| | ||| || ||||| Sbjct 127496 AGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACG----TACGGCCGTCCTC 127441 Query 45192 -AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| || || ||| | || | ||||||||||| || |||||||| || || ||||| Sbjct 127440 GAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTG 127381 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | ||| || || |||||||| ||||| || | || | Sbjct 127380 GATCTTGGCCTTGA-CGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCT 127322 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | || || ||||| |||||||| Sbjct 127321 TGCCGGTCAAGGTCTTGACAAAGATTTGCAT 127291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991532667400