Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1112 116 5e-21 seq1844 87.8 2e-12 >seq1112 Length=1085269 Score = 116 bits (128), Expect = 5e-21 Identities = 173/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | ||||||||||| ||||| ||||| || ||||| ||| || Sbjct 231487 AGCAAAATCGGTGTGCATTCCCTCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGGCC 231428 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | || |||||||| | ||||||||| | | ||| || || ||||||||||| Sbjct 231427 AGGCATCAATCCGCGCTTCTTGAGCCAGAAAATAGAAGCAAAGGAACCGGAGAAGAAGAT 231368 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA-GGAGCGGGAC-TTTGTATCA 127696 ||||| || || || || | |||||||||||||| | | | ||| | | | Sbjct 231367 ACCCTCGACCGCAGCAAATGCGACGAGACGCTCGGCAAACGTTGAGCGACGGTCGGA--G 231310 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||||| | |||||| | ||||| |||| ||| || || | |||| ||| || || Sbjct 231309 ATCCACTTGAGCGCCCAGTCAGCCTTCTTCTTGATGCACGGAATAGTCTCGATGGCATCG 231250 Query 127757 AA 127758 || Sbjct 231249 AA 231248 >seq1844 Length=637117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 177711 CGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 177770 |||||| || || | ||||||||| ||||| | |||||||| || || || || |||| Sbjct 142601 CGATGGTGAATTCGGTGGAGTAGATATTCGTGAGTTTGGCACCATAACCGTTTCGACCAC 142660 Query 177771 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAA 177830 || | | |||||| | ||| || ||||||| |||||||||||||||||| | | Sbjct 142661 CAGTGAGTTTCTTCTCATCGTCGTCATAGTTTGAGGACGTGAGAAGGTGACCAAAAATCA 142720 Query 177831 GTTCTGGATTCCAAATACCCTCCTTT 177856 ||| || |||| || ||||||| Sbjct 142721 TTTCGGGGATCCAGATCTTCTCCTTT 142746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491363845400