Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1955 138 3e-27 seq2 125 2e-23 seq1901 87.8 4e-12 seq1418 84.2 5e-11 seq1296 84.2 5e-11 >seq1955 Length=526780 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| |||||||||||||||| |||||||| | | || | ||||| Sbjct 128013 AGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCC 127954 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || ||||| ||||| || ||||| ||| ||| ||||| ||| Sbjct 127953 TCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCC 127894 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||||| | | || || ||||||||||| ||| Sbjct 127893 TGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTC 127834 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| || || Sbjct 127833 TTGCCCGTGAGGGTCTTGACAAAGATCTG 127805 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||||||||| || || | |||||||| | | ||| | ||||| Sbjct 127785 AGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCC 127726 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| ||||||||||| ||| ||| ||||| ||| Sbjct 127725 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 127666 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 127665 TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTC 127606 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| ||||| Sbjct 127605 TTGCCAGTAAGAGTCTTGACAAAGATTTG 127577 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || ||||| ||||| |||| ||||||||| | ||| || | ||||| || | Sbjct 128237 CAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGA 128178 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| ||||| |||||||| || ||||| || ||| ||| ||||| ||||||| Sbjct 128177 GCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAA 128118 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| ||| || | |||||| | | ||| || || | ||||| ||||| | Sbjct 128117 TCTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCC 128058 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || | || || || || ||||| Sbjct 128057 CAGTCAAGGTCTTGACGAAGATTTG 128033 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| |||||||| || |||| |||||| || | | ||| | || || Sbjct 128522 AGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCC 128463 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||||||||||||||| || ||| || || || ||| Sbjct 128462 TCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 128403 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | ||||| | | || || || | ||||| ||| Sbjct 128402 TGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTC 128343 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || ||||| || Sbjct 128342 TTGCCCGTGAGAGTCTTGACGAAAATCTG 128314 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||||||||| |||||||| |||| || || |||| ||| || | || || || | Sbjct 127498 CAAGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGA 127439 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 | ||||| || ||||| |||||||| |||||||| ||| ||| || || || || | Sbjct 127438 GTTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGA 127379 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| ||| |||| ||| || | | || || || | ||||| ||||| | Sbjct 127378 TCTTGGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGC 127319 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || | || || ||||| ||||| Sbjct 127318 CGGTCAAGGTCTTGACAAAGATTTG 127294 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| || || ||||||||||| |||||| || | | || Sbjct 128759 CGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTG 128700 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||| ||||| | ||||||||||| || ||||| Sbjct 128699 CGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCC 128640 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| || | ||||| | | || || |||||| Sbjct 128639 TCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAAC 128580 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || ||||| || Sbjct 128579 GTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTG 128542 >seq2 Length=528078 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || | |||||||||||||||| |||||||||| ||| ||||| || || Sbjct 317382 AGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCC 317441 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||||||||| ||||||||||| ||| || ||||| ||| Sbjct 317442 TCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 317501 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || || | ||| || | | ||| || || | || || ||| Sbjct 317502 TGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTC 317561 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 317562 TTTCCGGTCAAAGTCTTGACGAAGATCTG 317590 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || || |||||||| |||| || ||||||| | || | || ||||| | Sbjct 317677 CAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGA 317736 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || || |||||||| ||||||||||| ||| ||| || || ||||||| Sbjct 317737 GCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAA 317796 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 ||||| ||| || |||| ||||| | | ||| || || | || || ||||| | Sbjct 317797 TCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGC 317856 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 |||| | ||| || ||||| || || Sbjct 317857 CCGTCAAAGTCTTGACAAAGATCTG 317881 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| ||||||| || || || | | ||| | || || Sbjct 317154 AGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCC 317213 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | ||||| ||||| || || ||||| ||| Sbjct 317214 TCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCC 317273 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || || | ||||||||| Sbjct 317274 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTC 317333 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| || || Sbjct 317334 TTCCCGGTGAGCGTTTTCACAAAGATCTG 317362 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | ||| || || | ||| || || || || || ||||| || || Sbjct 317966 GTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCA 318025 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| ||||| ||||| ||| |||||| || || ||||| || ||| Sbjct 318026 GCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 318085 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||||||||| || ||||||||| Sbjct 318086 ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTT 318145 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 318146 TTGACAAATATCTG 318159 >seq1901 Length=11604 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||||||||||||||| |||| |||||||||| ||| || | ||||| Sbjct 8249 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTACGGCCATCC 8308 Query 199478 TCCAGCTGCTTTCCGGCGAAGAT 199500 || ||||| || || || ||||| Sbjct 8309 TCGAGCTGTTTGCCAGCAAAGAT 8331 >seq1418 Length=35037 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| | | ||| | ||| || Sbjct 21736 AGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCC 21795 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || ||||| || || |||||||| || Sbjct 21796 TCGAGCTGCTTGCCCGCAAAGATCAGGCGTTGCTGGTCGGG 21836 >seq1296 Length=48495 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| | | ||| | ||| || Sbjct 4823 AGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCC 4882 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || ||||| || || |||||||| || Sbjct 4883 TCGAGCTGCTTGCCCGCAAAGATCAGGCGTTGCTGGTCGGG 4923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178890408313355