Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1955 145 9e-30 seq2 120 3e-22 seq1418 86.0 7e-12 seq1296 86.0 7e-12 >seq1955 Length=526780 Score = 145 bits (160), Expect = 9e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || |||||||| | | |||||| |||| || | || |||||||||||||| ||||| Sbjct 128771 TAGTTGCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAA 128712 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||||| || |||||| | || ||||||||||||||||| || ||||| |||||||||||| Sbjct 128711 TCGGAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCG 128652 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | | |||||| || |||||| ||| | | | | |||||| || Sbjct 128651 GGTGGGATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGAC 128592 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| ||| || || ||||| || ||||| || || || || ||||| Sbjct 128591 TCGACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || ||||||||||| || |||||||| | || |||||||||||||| || || Sbjct 127765 CTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 127706 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || ||||||||| |||||| ||||| | Sbjct 127705 GATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 127646 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||| ||| || || || | ||||| || ||||| || || || || || Sbjct 127645 ATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGAC 127586 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 127585 AAAGATTTGCAT 127574 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| || || || || | || ||||| || ||||| || || Sbjct 127993 CTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAA 127934 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||||| || | || ||||||||| |||||| ||| | | Sbjct 127933 GATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 127874 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || |||| ||||||||| |||||||| || || || || Sbjct 127873 GTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGAC 127814 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 127813 AAAGATCTGCAT 127802 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || ||||| || |||| ||||||||||| || || || Sbjct 128502 CTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAA 128443 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | || |||||||||| ||| ||| ||||| ||| Sbjct 128442 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGA-CGT 128384 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| |||||||| || || || | Sbjct 128383 TGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 128324 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 128323 CGAAAATCTGCAT 128311 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | ||||| | || ||||||||||||||||| || Sbjct 128220 TCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 128161 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||| ||||| |||| || | || ||||||||| ||||| ||||| ||| Sbjct 128160 ATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGA-CGTT 128102 Query 46523 GCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | || | |||| ||||| || || | ||||| || || || |||| || || || Sbjct 128101 GTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTCTTGAC 128042 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 128041 GAAGATTTGCAT 128030 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||| || || || | || || |||| ||||| |||||||| ||||| Sbjct 127482 CTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAA 127423 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||||| || | || ||||||||| |||||| ||||| ||| Sbjct 127422 AATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 127364 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || ||| || || || | ||||| || ||||| |||| || || | Sbjct 127363 TGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGA 127304 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 127303 CAAAGATTTGCAT 127291 >seq2 Length=528078 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||||||||| || || || |||||||| |||| || ||||||||||| ||||| Sbjct 317174 CTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAA 317233 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | || ||||| ||| ||||||| ||| | ||| Sbjct 317234 GATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGGATCTTCGCCTTCA-CGT 317292 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | ||||| || || || || |||||||| | Sbjct 317293 TGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCA 317352 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 317353 CAAAGATCTGCAT 317365 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||| ||||| || || ||||| |||| ||||||||||| || || || Sbjct 317693 CTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCAGCAAA 317752 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||| ||| ||||| ||||| | Sbjct 317753 GATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTTGACATT 317812 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||| || || | || ||||| |||||||||| || || || Sbjct 317813 GTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTCTTGAC 317872 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 317873 AAAGATCTGCATT 317885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || ||||||||||||||||||||| || | || | |||| || Sbjct 317385 ACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCA 317444 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| || | ||||||||||| | || | || ||||||||| Sbjct 317445 AGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 317504 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| |||| | | | || || |||||| || || | || || || || Sbjct 317505 ATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTT 317564 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||| ||||| Sbjct 317565 CCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 >seq1418 Length=35037 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| |||||||||||||| || || Sbjct 21756 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCCTCGAGCTGCTTGCCCGCAAA 21815 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| ||| |||||||||| Sbjct 21816 GATCAGGCGTTGCTGGTCGG 21835 >seq1296 Length=48495 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| |||||||||||||| || || Sbjct 4843 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCCTCGAGCTGCTTGCCCGCAAA 4902 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| ||| |||||||||| Sbjct 4903 GATCAGGCGTTGCTGGTCGG 4922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565223809783800