Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1112 145 8e-30 seq2 127 2e-24 seq1955 125 7e-24 seq1418 82.4 8e-11 seq1296 82.4 8e-11 >seq1112 Length=1085269 Score = 145 bits (160), Expect = 8e-30 Identities = 347/535 (65%), Gaps = 55/535 (10%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| ||||| | ||||||||| ||| |||| |||||||| | || || || Sbjct 231508 CAAATGAGAGAACAAGAGGCAAGCAAAATCGGTGTGCATTCCCTCGTCACGAGAGATCAG 231449 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 ||||||| ||| |||| ||| ||||| | ||||| || |||||||| || || | || Sbjct 231448 TTCGTTGGAGAATGTCAGGCCAGGCATCAATCCGCGCTTCTTGAGCCAGAAAATAGAAGC 231389 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || || || ||||||| |||||||| || || || || || || |||||| | || Sbjct 231388 AAAGGAACCGGAGAAGAAGATACCCTCGACCGCAGCAAATGCGACGAGACGCTCGGCAAA 231329 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 ||| | | || |||||| |||||||| || ||||| | |||| |||||| Sbjct 231328 CGTTGAGCGACGGTCGGAGATCCACTTGAGCGCCCAGTCAGCCTTCTTCTTGATGCACGG 231269 Query 133116 CATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGT 133172 || || |||||||| | |||||| | || || || || | | |||||| Sbjct 231268 AATAGTCTCGATGGCATCGAACAAA---AATTCACGTTGCGCGGGCTCCTTGATGTAGGT 231212 Query 133173 GTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC-------------------- 133212 ||||||||| || || |||| ||||| | ||||||| Sbjct 231211 GTCGATGAGCAATGAGTAAGTTTCAGAGTGGATGTTCTCCCTAAATACGGTATCAGTAAA 231152 Query 133213 ATG----------------GCG-------------ATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| ||| || || || || || ||||| || | Sbjct 231151 ATGCGGGGAGACGGTTAGAGCGTACTGACATCATGATCTGGAAACCATAGAAGCATCGAG 231092 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 |||| | | || ||||| | | |||||| ||||||| |||||| || || || || | Sbjct 231091 CCTCTGCGGCTTGAACTTCGTTACTGAAACGTTCGACCAAATTTTCATTTACAATTCCAT 231032 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 | ||| |||||||| ||||| ||||| |||||| ||||||||||||||||| Sbjct 231031 CAGAGGCAGCGAAAAAAGCCAGGACGTGGGAGATGAAGTGGCGCTCGTTGTCGTT 230977 >seq2 Length=528078 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| || ||||| ||||| || || || |||||| |||| || ||| | | Sbjct 318163 AATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTC 318104 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||||| | || || ||||||||||| ||||||| Sbjct 318103 TGACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCA 318044 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| || |||||||| || |||| | | ||| | ||| || || Sbjct 318043 ACAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAA 317984 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT 38447 ||| ||||||||| | || ||||| Sbjct 317983 CATTCAAAAGGAATCCACCTTGCAT 317959 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||||||||| || || || |||||| |||| |||||| || | Sbjct 317365 ATGCAGATCTTTGTGAAAACGCTCACCGGGAAGACGATCACCCTCGAGGTCGAGTCCTCT 317306 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || || | ||||| Sbjct 317305 GACACCATTGACAACG-TGAAGGCGAAGATCCAGGATAAGGAAGGCATCCCACCTGACCA 317247 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||||||||| ||||| || |||| ||||| || || || || Sbjct 317246 ACAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCGGATTATAA 317187 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || | || || || |||||||| ||| Sbjct 317186 TATCCAAAAAGAGTCAACCCTCCACTTGGTGCTCCGT 317150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | |||||||| ||||| || |||| ||||| | | Sbjct 317885 AATGCAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTC 317826 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | || | ||| || | || || ||||| ||||| | ||||| Sbjct 317825 CGACACTATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGGATTCCTCCTGACCA 317766 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||||||||| | || || || ||||| || |||| ||||||||| ||||| || Sbjct 317765 GCAGCGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGCCGCACCCTCTCTGACTATAA 317706 Query 38423 CATCCAAAAGGA 38434 ||||| ||||| Sbjct 317705 TATCCAGAAGGA 317694 >seq1955 Length=526780 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| |||| |||||| || | Sbjct 128311 ATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 128370 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | ||||||| ||||| ||||| || || |||| || Sbjct 128371 GACACGATTGACAACG-TCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCA 128429 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || || || ||||| || |||| || || ||| || ||||| Sbjct 128430 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAA 128489 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || |||| || || | || || ||| | | ||||| Sbjct 128490 CATCCAGAAAGAGTCGACCCTCCACCTTGTCCTCCGTCTCCGTGGCGG 128537 Score = 113 bits (124), Expect = 5e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || || || | || |||||| || | Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || || | || || |||||||| || ||||||| Sbjct 128599 GACACGATTGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCA 128657 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||||| || || | ||||||||| ||| ||||| Sbjct 128658 GCAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAA 128717 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| ||| || || || ||||| ||||| Sbjct 128718 CATCCAAAAGGAGAGC-ACCCTTCACTTGGTCTTGCGT 128754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| |||||||| | || || ||| | | Sbjct 127802 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACGTTGGAGGTTGAGTCTTCG 127861 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| || || ||||| |||||||| Sbjct 127862 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAA 127921 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || |||||||| || || || | || ||||| |||||||| Sbjct 127922 CAACGTCTTATCTTTGCTGGCAAACAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 127981 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| |||| || || | || || ||| || | || || Sbjct 127982 ATCCAAAAGGAGTCGACCCTCCACCTTGTCCTTCGTCTGCGCGGTGG 128028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || ||||| |||| ||||| | | Sbjct 128030 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCG 128089 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || ||||| |||| || Sbjct 128090 GACACCATTGACAACG-TCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCA 128148 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || ||||| ||||| || || | ||||| | ||||||||| Sbjct 128149 GCAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAA 128208 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| |||||| |||| || || Sbjct 128209 CATCCAGAAGGAATCGACCCTTCA 128232 >seq1418 Length=35037 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| ||||||| || || || || | |||||||| ||||| || |||| || || Sbjct 21842 ATCCCCCCCGACCAGCAACGCCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGACGTACT 21783 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| |||||||||||||| ||||| |||| || || |||||||| || Sbjct 21782 CTCTCGGACTACAACATCCAGAAGGAGTCGACTCTTCACTTGGTGCTTCG 21733 >seq1296 Length=48495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| ||||||| || || || || | |||||||| ||||| || |||| || || Sbjct 4929 ATCCCCCCCGACCAGCAACGCCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGACGTACT 4870 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| |||||||||||||| ||||| |||| || || |||||||| || Sbjct 4869 CTCTCGGACTACAACATCCAGAAGGAGTCGACTCTTCACTTGGTGCTTCG 4820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159889289600