Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2 123 1e-22 seq1955 89.7 2e-12 seq1289 86.0 2e-11 >seq2 Length=528078 Score = 123 bits (136), Expect = 1e-22 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || |||||||||||||| || ||||| ||| Sbjct 317593 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTCT 317534 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || ||||| || |||||||| || |||||||| || Sbjct 317533 GATACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 317474 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | ||||| |||||||| || || || || ||| | || || ||| Sbjct 317473 CAGCGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTACAAT 317414 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 317413 ATCCAAAAGGA 317403 Score = 116 bits (128), Expect = 1e-20 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || || || || || || || || || || || || || Sbjct 318163 AATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTC 318104 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||| || | | || ||||||||||||||||| ||||||||||| || || Sbjct 318103 TGACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCA 318044 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| || | |||||| | || ||||| || || || || ||||| ||| | |||||||| Sbjct 318043 ACAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAA 317984 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 317983 CATTCAAAAGGA 317972 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || || || || || || || || || ||| Sbjct 317365 ATGCAGATCTTTGTGAAAACGCTCACCGGGAAGACGATCACCCTCGAGGTCGAGTCCTCT 317306 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || ||||||||||| || || ||||| ||| Sbjct 317305 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAAGGCATCCCACCTGACCAA 317246 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || || ||||| || || | ||| | ||||||||||| Sbjct 317245 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCGGATTATAAT 317186 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || |||| || ||||| || Sbjct 317185 ATCCAAAAAGAGTCAACCCTCCACTTGGT 317157 >seq1955 Length=526780 Score = 89.7 bits (98), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || || || |||| || || ||||| || || || || || || Sbjct 127288 ATCATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCG 127347 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || |||| ||| || | || || || ||||| ||||| || |||||||| || Sbjct 127348 TCGGATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGAC 127407 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || |||||| | |||||| | || || ||||| || || || | || ||| | |||||| Sbjct 127408 CAGCAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGTCTGATTAT 127467 Query 391227 AATATTGATAAGGATGCAACACTTCAC 391253 ||||| | ||||| | || || ||| Sbjct 127468 AATATCCAGAAGGAGTCCACTCTCCAC 127494 >seq1289 Length=1058660 Score = 86.0 bits (94), Expect = 2e-11 Identities = 183/271 (68%), Gaps = 3/271 (1%) Strand=Plus/Plus Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 |||| | ||||| ||||| |||||||| | || || | || ||||||||||| || Sbjct 584024 TAATCAGCGTTCCTGCTTACTTCAATGACTCCCAGCGCCTGGCTACTAAAGATGCTGGTG 584083 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 |||||||| | | || | || ||||| || || ||||| || |||||| | || | Sbjct 584084 CCATTGCTGGCCTCGAGGTCTTGCGTATTATCAACGAGCCTACTGCCGCTGCTATTGCCT 584143 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 |||| || || | ||| ||| | ||| || ||| |||| | || || || || | Sbjct 584144 ATGGTCT-CGATCAGCAATCGAA--AACAGAGAAGAATGTTTTGATCTTCGACTTGGGGG 584200 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| ||| ||| ||| | ||| || | ||| || |||| || ||||| | Sbjct 584201 GAGGGACTTTCGATGTCTCTCTCCTTAATATCACTGGTGGTGTTTTTGCCGTCAAGGCTA 584260 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || |||||| || ||||| || || || || Sbjct 584261 CCGCTGGTGACACCCATCTTGGCGGCGAGGA 584291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975666126813020