Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1112 140 4e-28 >seq1112 Length=1085269 Score = 140 bits (154), Expect = 4e-28 Identities = 180/242 (74%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 || || |||||| | || |||| || || | ||||| || || ||||| | |||||| Sbjct 231248 TTCGATGCCATCGAGACTATTCCGTGCATCAAGAAGAAGGCTGACTGGGCGCTCAAGTGG 231307 Query 102153 TTTGATACAAA-GTCGCGTTCC-TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGG 102210 | | | | ||||| | ||||| ||||| ||| |||||||||| || |||| Sbjct 231308 ATC--TCCGACCGTCGCTCAACGTTTGCCGAGCGTCTCGTCGCATTTGCTGCGGTCGAGG 231365 Query 102211 GTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 102269 ||||||||||||| |||||||| ||| |||||| |||||||||||||| || | ||| Sbjct 231366 GTATCTTCTTCTCCGGTTCCTT-TGCTTCTATTTTCTGGCTCAAGAAGCGCGGATTGATG 231424 Query 102270 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTT 102329 || || || ||||||||||| || |||||||||||||||||| | ||| || ||| Sbjct 231425 CCTGGCCTGACATTCTCCAACGAACTGATCTCTCGTGACGAGGGAATGCACACCGATTTT 231484 Query 102330 GC 102331 || Sbjct 231485 GC 231486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620726377086800