Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1112 98.7 1e-15 >seq1112 Length=1085269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 236/345 (68%), Gaps = 24/345 (7%) Strand=Plus/Minus Query 117183 GAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG--GCGT-GGATAGTTTCGGTAGT 117239 |||| ||| ||||||| ||||||| || ||||||| ||| ||| || |||| || Sbjct 231577 GAACTCTTGCTCAATCGCAACCGCTTC---CACGATGATGCGGCGGACTGTCTCGGG-GT 231522 Query 117240 G-GGTCTATTACGCAAAGTCTTGA-AGAGCTCCACG---GCAAACTCCTGGTGGAGACCC 117294 | || | || |||||| ||| ||| | | | ||||| || ||| | ||| Sbjct 231521 GAGGGCGTTTGCGCAAA----TGAGAGAACAAGAGGCAAGCAAAATCGGTGTGCATTCCC 231466 Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 || || || || || ||||| || ||||| ||||| ||||| | || |||||||| Sbjct 231465 TCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGGCCAGGCATCAATCCGCGCTTCTTG 231406 Query 117355 AACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | ||| |||||| ||| || || |||||||||||||||||||| || ||||| || Sbjct 231405 AGCCAGAAAATAGAAGCA-AAGGAACCGGAGAAGAAGATACCCTCGACCGCAGCAAATGC 231347 Query 117414 AAAAAGGCGCTCGGCGAA---GGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTT 117470 | || |||||||| || |||||| | | | | ||| || | ||||| | Sbjct 231346 GACGAGACGCTCGGCAAACGTTGAGCGACGGTCGGAG---ATCCACTTGAGCGCCCAGTC 231290 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 |||||||||| || || || | ||| | |||||| || || || Sbjct 231289 AGCCTTCTTCTTGATGCACGGAATAGTCTCGATGGCATCGAACAA 231245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965571120600