Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 167 5e-36 seq1955 163 6e-35 >seq2 Length=528078 Score = 167 bits (184), Expect = 5e-36 Identities = 158/199 (79%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || |||||||| || ||||||| |||| |||||||| || |||||||| ||||| Sbjct 317966 GTGGATTCCTTTTGAATGTTATAATCGGACAAG-GTTCTCCCGTCCTCGAGCTGTTTACC 318024 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || || || |||||||| |||||||| || || || ||||||||||| ||| Sbjct 318025 AGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTT 318084 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || || |||||||| ||| ||||| || ||||| | ||||||||| || | ||| Sbjct 318085 GACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGT 318144 Query 195123 TTTTACGAACACTTGCATT 195141 ||| || || | |||||| Sbjct 318145 TTTGACAAATATCTGCATT 318163 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| |||||||| || || ||||| || || | || || | || ||||||| Sbjct 317677 CAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGA 317736 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || || ||||| || || || ||||| |||||||| || || || || |||| Sbjct 317737 GCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAA 317796 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| |||||| || || || ||||| || ||| || || || |||| ||||| | Sbjct 317797 TCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGC 317856 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| || || || | |||||| Sbjct 317857 CCGTCAAAGTCTTGACAAAGATCTGCATT 317885 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||||||||| ||||| ||||| | |||||| | || || || ||||| Sbjct 317162 GTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTCAAGCTG 317221 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | ||| |||||||| || || |||||||| || || || || || Sbjct 317222 CTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGGATCTT 317281 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||||||||| || || || || ||||| | |||||| || || Sbjct 317282 CGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTCCCGGT 317341 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 317342 GAGCGTTTTCACAAAGATCTGCAT 317365 >seq1955 Length=526780 Score = 163 bits (180), Expect = 6e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| || || || || || || ||||| |||| | || | ||||| |||| Sbjct 128237 CAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGA 128178 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || || ||||| || ||||| || || |||||||||||||| ||||| |||| Sbjct 128177 GCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAA 128118 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||||||||| ||||||||||||||| ||| || || || || | ||||| | Sbjct 128117 TCTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCC 128058 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || ||||| | |||||| Sbjct 128057 CAGTCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| |||||||| ||||||||||| || | ||||| | ||||| ||| Sbjct 127782 ACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCG 127723 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| |||||||||||||| ||||| || Sbjct 127722 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 127663 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| || || ||||| || || | ||||| Sbjct 127662 ATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTG 127603 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | |||||| Sbjct 127602 CCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||| ||||||||||| || || ||||| ||||| | | || | || || |||| Sbjct 127498 CAAGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGA 127439 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 | ||||| || ||||| || || ||||| ||||| ||||||||||| || |||||||| | Sbjct 127438 GTTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGA 127379 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||||||||| || ||||| ||||| || || || ||||| | ||||| | Sbjct 127378 TCTTGGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGC 127319 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || || || | |||||| Sbjct 127318 CGGTCAAGGTCTTGACAAAGATTTGCAT 127291 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||| ||| ||| ||||| || |||||||||| ||| || | Sbjct 128757 GAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCG 128698 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||||||||||||| || || ||||| | ||| || ||||| || || || || || Sbjct 128697 CCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTC 128638 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || |||||||| || ||| ||||| ||||| |||||||| || ||||| | || Sbjct 128637 CTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGT 128578 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | || || ||||| | ||||| Sbjct 128577 AATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| || || |||||||| | ||||| | || || ||| Sbjct 128519 ACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCG 128460 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || ||||| ||||| || ||||| || Sbjct 128459 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGG 128400 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||| ||||| ||||| || || || || ||||| | ||||| Sbjct 128399 ATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTG 128340 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 128339 CCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| ||||| |||||||| || | ||| || | ||||| ||| Sbjct 128010 ACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCG 127951 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || |||||||| ||||||||||| |||||||||||||| ||||| || Sbjct 127950 AGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 127891 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || || ||||||||| || || || | || | ||||| Sbjct 127890 ATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTG 127831 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 127830 CCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109452245543855