Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1955 111 1e-19 seq2 93.3 3e-14 >seq1955 Length=526780 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || ||||| || | || | || || ||||| ||||| ||||| Sbjct 128501 TCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 128442 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| || ||| |||||| Sbjct 128441 ATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTG 128382 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| || ||| || |||| ||| ||||| || |||||||||||||| || Sbjct 128381 TCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACG 128322 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 128321 AAAATCTGCAT 128311 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || || || |||||||||||| | || |||| || || ||||| || ||||| Sbjct 127992 TCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAG 127933 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| ||||| | || | || |||||||| ||||| || || || Sbjct 127932 ATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--AT 127875 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | |||||| || | || ||||| || |||||||| ||||| Sbjct 127874 --TGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGGGTCTT 127817 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 127816 GACAAAGATCTGCATA 127801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || |||||||| || | || |||| || ||||| || || ||||| Sbjct 127764 TCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 127705 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||||| |||||| Sbjct 127704 ATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTA 127645 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || || || || || || |||||||| ||| Sbjct 127644 TCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACA 127585 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 127584 AAGATTTGCAT 127574 >seq2 Length=528078 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||| || ||||| || |||||||| || ||| | || | || || Sbjct 317675 ACCAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTC 317734 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || || |||||||| | || | ||||||||| || Sbjct 317735 GAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTG 317794 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGG 34947 |||||| ||||| || | ||||| ||| | || || |||| || |||| Sbjct 317795 AATCTTTGCCTTGAC--AT--TGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGG 317850 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| | |||||| |||||||||||||| Sbjct 317851 TCTTGCCCGTCAAAGTCTTGACAAAGATCTGCAT 317884 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||||| || || ||||| |||||||| | || | || || Sbjct 317157 ACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTCA 317216 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | ||| || ||||| | || | || ||||| || Sbjct 317217 AGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGG 317276 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | ||| || ||| || |||| ||| || || || Sbjct 317277 ATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTC 317336 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || |||||||||||||||||| Sbjct 317337 CCGGTGAGCGTTTTCACAAAGATCTGCATA 317366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||||||||| || || | | ||| | || || |||||||| || || || Sbjct 317971 TTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCAGCGAA 318030 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || ||||| | || | |||||||| || ||| || ||||| | Sbjct 318031 AATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTTGAC--A 318088 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| ||| | ||| || |||| ||| || || ||||| |||||||| | Sbjct 318089 T--TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTTT 318146 Query 34966 TCACAAAGATCTGCATATTCGT 34987 | ||||| |||||||| |||| Sbjct 318147 TGACAAATATCTGCATTCTCGT 318168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625429885320