Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1289 93.3 3e-13 seq1456 89.7 4e-12 seq1955 87.8 1e-11 >seq1289 Length=1058660 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 |||| | || || || || || |||||||| || || | ||||||||||||||||| Sbjct 584024 TAATCAGCGTTCCTGCTTACTTCAATGACTCCCAGCGCCTGGCTACTAAAGATGCTGGTG 584083 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 |||||||| || | || | ||||||||||| || |||||||| ||||| |||| | Sbjct 584084 CCATTGCTGGCCTCGAGGTCTTGCGTATTATCAACGAGCCTACTGCCGCTGCTATTGCCT 584143 Query 550524 ATGGACTTGAT 550534 |||| || ||| Sbjct 584144 ATGGTCTCGAT 584154 >seq1456 Length=155921 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 || || ||||| || ||| ||||||||||||| || ||||||||||| ||||| || Sbjct 153084 CCTGCTTATTTCAACGACGCACAACGTCAAGCCACGAAAGATGCTGGTACAATTGCCGGC 153143 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533 || |||| |||||| | ||||| || || |||||||| ||| | || || || || || Sbjct 153144 CTCGATGTCCTTCGTGTGATCAACGAGCCCACTGCTGCGGCATTGGCCTACGGCCTCGA 153202 >seq1955 Length=526780 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || | |||||||| || || ||||| || |||||||| | || || Sbjct 128757 GAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGG--ATGTTGTAATCGGAAAGGGTG 128700 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| || || || |||||||| || | || ||||| || || || ||||| Sbjct 128699 CGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCC 128640 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || ||||||||||| || || || ||||| || || | | || | | ||| | Sbjct 128639 TCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAG-GACTCGACTTCCAA 128581 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||| || || ||||| || || |||||||| |||||| Sbjct 128580 CGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCATA 128538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029186793486850