Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq1955 109 4e-19 seq1901 91.5 1e-13 seq1724 87.8 1e-12 >seq2 Length=528078 Score = 136 bits (150), Expect = 3e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101262 CTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCA 101321 ||| ||| | ||| ||||| ||||| || || ||||||| | ||||| | || || | Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 || ||||| || || || | |||||||| ||||| ||||| || || |||||||||| Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 |||| || ||| | || | |||||||| | ||||| || || |||| ||| || | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | |||||| |||||||||||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCAT 318162 >seq1955 Length=526780 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || ||||| || |||||||| || | || ||| | | |||| || | || Sbjct 127777 ATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTG 127718 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||||| || || || ||||||||||| || || || || || Sbjct 127717 CTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 127658 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | ||||| |||| || ||||| ||||||| || ||||| || Sbjct 127657 GGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGT 127598 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||| || ||||| || |||||| Sbjct 127597 AAGAGTCTTGACAAAGATTTGCATG 127573 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| |||| | || | | |||| || | ||| Sbjct 128232 TGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGC 128173 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | || || |||||||| ||||||||||| || || ||||| || Sbjct 128172 TTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTA 128113 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||| || || ||||||| || || || || Sbjct 128112 GCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTC 128053 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || || ||||| Sbjct 128052 AAGGTCTTGACGAAGATTTGCAT 128030 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || ||||| | | ||| || || || |||||||| || ||||| || ||||||||| Sbjct 128768 TTGCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCG 128709 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | |||| || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 128708 GAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGT 128649 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || || || ||||||||||| || || || | || | ||||| || | || Sbjct 128648 GGGATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCG 128589 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || | || |||||||| | || || || || |||||||| Sbjct 128588 ACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || ||||| |||||||| || | | || | | |||| || | ||| Sbjct 128004 TGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGT 127945 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||| ||||| ||||| ||||||||||| || || || || || Sbjct 127944 TTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 127885 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || | |||| || ||||| || Sbjct 127884 GCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTG 127825 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 127824 AGGGTCTTGACAAAGATCTGCAT 127802 >seq1901 Length=11604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 ||||| || ||||| || ||||| || ||||||||||| || || ||| | || | | Sbjct 8392 CGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATA 8451 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 || || || | |||||| ||||| |||| ||| || || |||| ||||| || |||||| Sbjct 8452 GTATCGGAAGATTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATATC 8511 Query 101465 TGCATGGT 101472 ||||| || Sbjct 8512 TGCATCGT 8519 >seq1724 Length=14637 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 ||||| || ||||| || || || || ||||||||||| || || ||| | || | | Sbjct 11417 CGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATA 11476 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 || || || | |||||| ||||| |||| ||| || || |||| ||||| || |||||| Sbjct 11477 GTATCGGAAGATTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATATC 11536 Query 101465 TGCATGGT 101472 ||||| || Sbjct 11537 TGCATCGT 11544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396268426787205