Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1955 105 5e-18 seq2 100 2e-16 >seq1955 Length=526780 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || ||| || | || ||||| ||||| || || |||||||| ||||| || |||||||| Sbjct 128769 GTTGCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATC 128710 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 || || | || | || || | |||||| |||||||| |||| |||||| || || | Sbjct 128709 GGAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGG 128650 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | |||||||| || |||||| || || | | | | || || | ||| Sbjct 128649 TGGGATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTC 128590 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || || || || | || || || ||||||||||| Sbjct 128589 GACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 >seq2 Length=528078 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || ||||| || ||||| || | || |||| || | |||| Sbjct 317682 TGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGC 317741 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| || || | |||| |||||||| || ||||||| Sbjct 317742 TTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTT 317801 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || |||| || ||||| | ||||| || || |||||| Sbjct 317802 GCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTC 317861 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| |||||||| Sbjct 317862 AAAGTCTTGACAAAGATCTGCAT 317884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928012871995