Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1112 140 6e-28 seq424 86.0 1e-11 >seq1112 Length=1085269 Score = 140 bits (154), Expect = 6e-28 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 25787 TGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGT 25846 |||| | |||||||||| || || ||||||||| |||||| ||||| | |||| Sbjct 231246 TGTTCGATGCCATCGAGACTATTCCGTGCATCAAGAAGAAGGCTGACTGGGCGCTCAAGT 231305 Query 25847 GGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGG 25906 ||||| | || || | ||||||| |||||| || || || |||||||| || |||| Sbjct 231306 GGATCTCCGACCGTCGCTCAACGTTTGCCGAGCGTCTCGTCGCATTTGCTGCGGTCGAGG 231365 Query 25907 GCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGC 25966 | ||||| ||| |||||| ||||| | || |||||||||||| || || |||| Sbjct 231366 GTATCTTCTTCTCCGGTTCCTTTGCTTCTATTTTCTGGCTCAAGAAGCGCGGATTGATGC 231425 Query 25967 CCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTG 26026 | || ||| || |||||||| || ||| | |||||||| | |||| ||||||| Sbjct 231426 CTGGCCTGACATTCTCCAACGAACTGATCTCTCGTGACGAGGGAATGCACACCGATTTTG 231485 Query 26027 CCTGCCT 26033 | ||||| Sbjct 231486 CTTGCCT 231492 >seq424 Length=76155 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGT 221481 || ||||||||||| ||||| || |||| ||||||| || | |||||||| || Sbjct 60883 GCGGCGTGGTAGATTGTCTCGAATATCAAAAGGTTGAGT-TCGCGAGCCTCGGGGGAGTC 60825 Query 221482 GAAGGGCATACGCA-GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGG 221540 ||| ||||| || ||| |||| | | || || || ||||| || ||||| || || | Sbjct 60824 GAACGGCATCTTCATGCACATGAATG-CATCAGCAAGGCCCTGCACACCGATGCCAATCG 60766 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 ||||||| | | | || || | ||||| || ||||| ||| ||||||||||||| Sbjct 60765 GCCTGTGGCGCATATTCGAGTTGCGAGCTTCAGGAACGGGGTAATAGTTGACGTCGAT 60708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928820824193600