Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1511 107 1e-17 seq2 104 2e-16 seq1955 93.3 3e-13 >seq1511 Length=901688 Score = 107 bits (118), Expect = 1e-17 Identities = 346/528 (66%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 474352 TACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCA 474411 |||| |||| || || | || |||||||||| |||||||| |||||||| ||||| Sbjct 83506 TACTCACAGCTGCGTTGGAGTATGGCAAAATGACCGTGTAGAAATCATTGCCAACGACCA 83565 Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 ||||| | || || || || ||||| || || | || ||||| | ||| || ||||| Sbjct 83566 GGGTAACCGCACGACTCCTTCGTATGTGTCCTTCTCGGACACTGAGCGTCTCATCGGAGA 83625 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATT 474531 |||||| || | |||| || || || || || || | || || || ||| | | Sbjct 83626 TGCTGCGAAGAACCAAGTCGCGATGAACCCGGTGAACACCGTGTTCGACGCCAAACGTCT 83685 Query 474532 GATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAA 474591 ||||| || || || ||| | | |||||||| ||| | || | || || || Sbjct 83686 TATTGGACGCCGCTTCGACGATGCGA-GGTCCAATCGGATCTCAAGCACTTCCCCTTCAA 83744 Query 474592 GGTGATAAATGTTGGTGGTAAACCATATAT-AGAAGC-AATACACGCAGGTGAAACTAAA 474649 ||| ||| || || || || ||| || | ||||| || ||| || || || Sbjct 83745 GGTTGAAAACAAGGGCGGCAAGCCGGTTATCAGCGTCGAATAC-CG-AGGCGAGACCAAG 83802 Query 474650 CAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGC 474709 ||| | || || | || || || ||||| | ||| ||||| |||| || Sbjct 83803 ATCTTTACGCCCGAGGAGATCTCGTCCATGGTCCTCCTCAAGATGAAGGAAACTGCCGAA 83862 Query 474710 TCATATCTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGA 474768 || ||||| || || | | ||| | || || || || || || || || || || || Sbjct 83863 TCTTATCTCGGAACGACCATCAAC-AACGCGGTCATCACCGTCCCGGCTTACTTCAACGA 83921 Query 474769 TTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTAT 474828 || || ||||| || || || ||||| || || | ||||| || || | ||||| Sbjct 83922 CTCGCAGCGTCAGGCCACCAAGGATGCCGGTGTGATCTCTGGTCTCAACGTCCTCCGTAT 83981 Query 474829 TATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || || || || | || |||||||| || ||||| Sbjct 83982 CATCAACGAGCCCACCGCCGCTGCCATCGCCTATGGTCTCGACAAGAA 84029 >seq2 Length=528078 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||| || || || || || || || || |||||||| || ||||||||| Sbjct 317439 TCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTG 317498 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || |||||||| ||||||| ||||| ||||||| | ||||| |||||| Sbjct 317499 TCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATA 317558 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | |||||| ||||| || || Sbjct 317559 GTCTTTCCGGTCAAAGTCTTGACGAAGATCTG 317590 >seq1955 Length=526780 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| || || ||||| || ||| || || | ||||| Sbjct 127795 ACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGT 127736 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| |||||||| || || || || || ||||||||||| || Sbjct 127735 GCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCC 127676 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| ||||| || || || || | | | | ||| | Sbjct 127675 TTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGA-CTTCGA 127617 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || |||||||| || || ||||| Sbjct 127616 GAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTG 127577 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || || ||||| | || ||||| | ||||| Sbjct 128532 ACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGT 128473 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || |||||||||||||| || ||||| || ||||| ||||| || || Sbjct 128472 ACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCC 128413 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || || || ||||| ||||| || |||| | || || Sbjct 128412 CTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAG 128353 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| |||||||| || Sbjct 128352 GGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTG 128314 Score = 89.7 bits (98), Expect = 3e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||||||||||| | || | | || || |||||||| ||||| ||||| |||||||| Sbjct 127470 ATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTG 127411 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || || |||||||| || ||||||||||| ||||| ||||| || || ||||| Sbjct 127410 CTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC 127351 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| ||||| || ||||| | ||||| || || ||||| Sbjct 127350 CGACGACTCGA-CCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACAAAGATTTG 127294 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || ||||| || ||||| || || || ||| ||| || | || || || | || | Sbjct 128022 CGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATA--TTGTAGTCCGAAAGGG 127965 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || ||||| || |||||||| |||||||||||||| || |||||||| | Sbjct 127964 TACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGC 127905 Query 480670 CTTCCTTGTCTTGAATCTT 480688 |||||||||| || ||||| Sbjct 127904 CTTCCTTGTCCTGGATCTT 127886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268090622130620