Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1112 98.7 1e-15 >seq1112 Length=1085269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 236/345 (68%), Gaps = 24/345 (7%) Strand=Plus/Plus Query 64987 TTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAA 65046 || || || |||||| | ||| | || || || |||||||||| | ||||| | || Sbjct 231245 TTGTTCGATGCCATCGAGACTATTCCGTGCATCAAGAAGAAGGCTGACTGGGCGCTCAAG 231304 Query 65047 TGGTTTGACACAAAGTCTCGCTCC---TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTG 65103 ||| | | | | |||||| || |||||||| || | || ||||| || Sbjct 231305 TGGAT---CTCCGACCGTCGCTCAACGTTTGCCGAGCGTCTCGTCGCATTTGCTGCGGTC 231361 Query 65104 GAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCT 65162 |||||||||||||||||||| || || ||| |||||| ||| | |||||||| || | Sbjct 231362 GAGGGTATCTTCTTCTCCGGTTCCTT-TGCTTCTATTTTCTGGCTCAAGAAGCGCGGATT 231420 Query 65163 CATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGA 65222 ||||| ||||| ||||| || ||||| || || || || ||||| | ||| || Sbjct 231421 GATGCCTGGCCTGACATTCTCCAACGAACTGATCTCTCGTGACGAGGGAATGCACACCGA 231480 Query 65223 GTTTGC---CGTGGAGCTCT-TCAAGACTTTGCGTAATAGACC-CACTACCGAAACTATC 65277 ||||| | | | ||| ||| |||||| || | || ||| |||| || || Sbjct 231481 TTTTGCTTGCCTCTTGTTCTCTCA----TTTGCGCAAACGCCCTCAC-CCCGAGACAGTC 231535 Query 65278 C-ACGC--CATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTC 65319 | ||| ||||||| || ||||||| ||||||| ||| |||| Sbjct 231536 CGCCGCATCATCGTG---GAAGCGGTTGCGATTGAGCAAGAGTTC 231577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554201047200