Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1112 120 4e-21 seq1844 93.3 5e-13 >seq1112 Length=1085269 Score = 120 bits (132), Expect = 4e-21 Identities = 194/272 (71%), Gaps = 9/272 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||||| ||||||| || | ||||| ||||| | ||||||||| Sbjct 231468 CCCTCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGGCCAGGCATCAATCCGCGCTTC 231409 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| || || | ||| || || ||||| ||||| |||||||| || ||||| Sbjct 231408 TTGAGCCAGAAAATAGAAGCA-AAGGAACCGGAGAAGAAGATACCCTCGACCGCAGCAAA 231350 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| ||| ||||||||||| || | | | || | ||||||||| | |||||| Sbjct 231349 TGCGACGAGACGCTCGGCAAACGTTGAGCGACGGTC---GGAGATCCACTTGAGCGCCCA 231293 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC-GCGAA-AGAGGTGGTCCTTT 869416 ||| ||||| ||| | | |||| | || |||||||| |||| | | | || | Sbjct 231292 GTCAGCCTTCTTCTTGATGCACGGAATAGTCTCGATGGCATCGAACAAAAAT--TCACGT 231235 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | || || ||||||| ||||||||||| || Sbjct 231234 TGCGCGGGCTCCTTGATGTAGGTGTCGATGAG 231203 >seq1844 Length=637117 Score = 93.3 bits (102), Expect = 5e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || |||||| ||||||| |||| || ||||||||||||||||||| || | ||| | | Sbjct 620216 GCTTCGGTGGCGATGCGCTCGAAAATATCGTTGACAAACGAGTTCAAGATGGCCATGGCC 620275 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||||| || ||||| || || ||||||||||| Sbjct 620276 TTGTTGGAGATACCAGTATCGGGATGGACTTGCTTGAGCAC 620316 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 || || ||||| ||||||||||| |||||| | | ||||| ||| | ||||| || || Sbjct 237288 CCCCGCCCCTCGCACGCCGACTATACCTACCTTGAGAAGTATGGCGTTAAGGCATCTTCA 237229 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || ||||| || || || || ||||||||| | |||||||| || || || ||||| Sbjct 237228 GGTGGAGGTCGCTCTTCGGCACGCGAGACCATTGGACGCGTCGCTGCTGGTGCCATCGCC 237169 Query 18478 GAGAA 18482 ||||| Sbjct 237168 GAGAA 237164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106969736429605