Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1955 136 4e-27 seq2 125 6e-24 >seq1955 Length=526780 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || ||||||||| | ||||| || || | Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| || || ||||| || ||||| || Sbjct 128599 GACACGATTGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCAG 128658 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || ||||| || ||| | | | | | || ||||| ||| Sbjct 128659 CAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAAC 128718 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| || || |||||||| ||||| | || |||||| Sbjct 128719 ATCCAAAAGGAGAGCACCCTTCACTTGGTCTTGCGTCTCCGTGGAGGC 128766 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||| | || || || | | Sbjct 127802 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACGTTGGAGGTTGAGTCTTCG 127861 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| ||||| ||||| || |||||||| ||| Sbjct 127862 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAA 127921 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || ||||| || |||||| | | | | || || || || Sbjct 127922 CAACGTCTTATCTTTGCTGGCAAACAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 127981 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || ||| | || | || ||||||| || Sbjct 127982 ATCCAAAAGGAGTCGACCCTCCACCTTGTCCTTCGTCTGCGCGGTGG 128028 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || || ||||| || ||||| || ||| | | Sbjct 128029 GATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTC 128088 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 128089 GGACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCA 128148 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | ||||||||||| || ||||| |||||| | | |||| || || || Sbjct 128149 GCAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAA 128208 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTGGT 24912 ||| || ||||||||||| || || |||||| Sbjct 128209 CATCCAGAAGGAATCGACCCTTCACCTTGGT 128239 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || || || | Sbjct 128311 ATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 128370 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| ||||| || || || ||||||||||| Sbjct 128371 GACACGATTGACAACGTCAAGGCGAAA-ATCCAGGACAAGGAGGGCATCCCTCCCGATCA 128429 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || ||||| ||||| | | | || ||||| || Sbjct 128430 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAA 128489 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || || ||||| || ||| Sbjct 128490 CATCCAGAAAGAGTCGACCCTCCAC 128514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||| || ||||| || ||||| || || | | Sbjct 127291 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 127350 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || |||||||| || Sbjct 127351 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 127410 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || || || ||||| | | |||| |||||||| Sbjct 127411 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGTCTGATTATAAT 127470 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 || || ||||| || || || || |||||| Sbjct 127471 ATCCAGAAGGAGTCCACTCTCCACCTTGGT 127500 >seq2 Length=528078 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || ||||| || || || || ||||| || || | | Sbjct 318162 ATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTCT 318103 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || ||||| || || ||||| |||||||| ||| Sbjct 318102 GACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCAA 318043 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || || || |||||||| ||||| ||||| | |||| ||||||||| Sbjct 318042 CAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAAC 317983 Query 24884 ATTCAAAAGGAATCGAC 24900 |||||||||||||| || Sbjct 317982 ATTCAAAAGGAATCCAC 317966 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | |||||||| ||||| || || || || ||||| || || || | Sbjct 317365 ATGCAGATCTTTGTGAAAACGCTCACCGGGAAGACGATCACCCTCGAGGTCGAGTCCTCT 317306 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || ||| Sbjct 317305 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAAGGCATCCCACCTGACCAA 317246 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| ||||| | | | || |||||||| Sbjct 317245 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCGGATTATAAT 317186 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||| || || || || ||||||||| Sbjct 317185 ATCCAAAAAGAGTCAACCCTCCACTTGGTG 317156 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || |||||||| || || || ||| | | Sbjct 317593 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTCT 317534 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||| || ||||| ||||| || ||||| || || Sbjct 317533 GATACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 317474 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| |||||||| || || ||||| || | |||| || || || Sbjct 317473 CAGCGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTACAAT 317414 Query 24884 ATTCAAAAGGAATCGAC 24900 || |||||||| ||||| Sbjct 317413 ATCCAAAAGGAGTCGAC 317397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| ||||| || ||| | || Sbjct 317884 ATGCAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTCC 317825 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || || || || || || ||||| || || Sbjct 317824 GACACTATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGGATTCCTCCTGACCAG 317765 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| ||||| ||||| || || | | | | || || ||||| Sbjct 317764 CAGCGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGCCGCACCCTCTCTGACTATAAT 317705 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT--GTTGCGATT 24921 || || ||||| || || || || |||||| ||| ||||| Sbjct 317704 ATCCAGAAGGAGTCCACCCTTCACCTTGGTAAGTTACGATT 317664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885987018200