Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1112 136 6e-26 seq1844 93.3 7e-13 seq424 86.0 1e-10 >seq1112 Length=1085269 Score = 136 bits (150), Expect = 6e-26 Identities = 217/304 (71%), Gaps = 13/304 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||||| ||||||| || ||||| ||||| | ||||||||| Sbjct 231468 CCCTCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGGCCAGGCATCAATCCGCGCTTC 231409 Query 794401 TTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 |||||||| || || | || || ||| | ||||| ||||| |||||||| || ||| Sbjct 231408 TTGAGCCAGAAAATAGAAGCAAAGGAACCG---GAGAAGAAGATACCCTCGACCGCAGCA 231352 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 || ||||||| ||||||||||| || | | || | ||||||||| | |||| Sbjct 231351 AATGCGACGAGACGCTCGGCAAACGTTGAGCGACGGTC---GGAGATCCACTTGAGCGCC 231295 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC-GCGAA-AGAGGTGGTCCT 794575 || || ||||| ||| | | | || | || |||||||| |||| | | | | | Sbjct 231294 CAGTCAGCCTTCTTCTTGATGCACGGAATAGTCTCGATGGCATCGAACAAAAATTCACGT 231235 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | || | || ||||||| ||||||||||||||| | ||||| || || |||||||||| Sbjct 231234 T-GCG-CGGGCTCCTTGATGTAGGTGTCGATGAGCAATGAGTAAGTTTCAGAGTGGATGT 231177 Query 794636 TTTC 794639 | || Sbjct 231176 TCTC 231173 >seq1844 Length=637117 Score = 93.3 bits (102), Expect = 7e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || |||||| ||||||| |||| || ||||||||||||||||||| ||| | ||| | Sbjct 620216 GCTTCGGTGGCGATGCGCTCGAAAATATCGTTGACAAACGAGTTCAAGATGGCCATGGCC 620275 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||| || ||||| || || ||||||||||| Sbjct 620276 TTGTTGGAGATACCAGTATCGGGATGGACTTGCTTGAGCAC 620316 >seq424 Length=76155 Score = 86.0 bits (94), Expect = 1e-10 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCGGTTGAGGCGACGCGCGCCGGCGCTCTCC 2070111 || || |||||||| ||||| || || ||||||| || || ||| | || Sbjct 60883 GCGGCGTGGTAGATTGTCTCGAATATCAAAAGGTTGAGTTCGCGAGCCTCGGGGGAGTCG 60824 Query 2070112 CACGGCAGGTCCAT---CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168 |||||| | ||| |||| || || || || ||||||||||| |||| ||| ||| Sbjct 60823 AACGGCATCTTCATGCACATG---AATGCATCAGCAAGGCCCTGCACACCGATGCCAATC 60767 Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 |||| |||||||| ||||||| || || || || || ||||| | ||||| |||||| Sbjct 60766 GGCCTGTGGCGCATATTCGAGTTGCGAGCTTCAGGAACGGGGTAATAGTTGACGTCGAT 60708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916026736531535