Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1955 123 2e-23 seq2 111 1e-19 >seq1955 Length=526780 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||| ||||| ||||| || ||||| || | || | || Sbjct 128522 AGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCC 128463 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || || ||||| || | || | ||||||||||| Sbjct 128462 TCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 128403 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | |||| ||| || |||||| || | ||| |||||| Sbjct 128402 TGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTC 128343 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||| ||||| || || ||||||||| Sbjct 128342 TTGCCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||||| |||||||||||| || ||||| || || || ||| ||||| |||| Sbjct 128751 CAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATC 128692 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||||| ||| |||||||| | || | |||||||| || Sbjct 128691 TTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATC 128632 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || || |||||| || | || || || Sbjct 128631 TTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGT 128572 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || ||||| || || |||||||| Sbjct 128571 CTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||| | ||| ||||||||| || ||||| || || | | || | || || ||| Sbjct 127496 AGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGT 127437 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || ||||| || || ||||||||||| | || | ||||||||||| | || Sbjct 127436 TGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATC 127377 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | || | || | |||||| || | ||| || ||||| || Sbjct 127376 TTGGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCG 127317 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || | |||||| |||||||| |||||||| Sbjct 127316 GTCAAGGTCTTGACAAAGATTTGCATGAT 127288 >seq2 Length=528078 Score = 111 bits (122), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||||| |||| ||||||||| || |||||||| || ||| |||| | || || || Sbjct 317679 AGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGC 317738 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || || ||||| || || |||||||| | || | ||||||||| || | || Sbjct 317739 TGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATC 317798 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATT-GGCC---TCGACATCAACGGTTATGGTCTT 34947 ||| ||||| || | ||||| | || | ||||| || | || |||||||| Sbjct 317799 TTTGCCTTGAC--AT--TGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTT 317854 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| | ||||| |||||||||||||| Sbjct 317855 GCCCGTCAAAGTCTTGACAAAGATCTGCAT 317884 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||| || || || ||||| ||||| || |||| | || Sbjct 317154 AGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCC 317213 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| ||| || ||||| | || | || ||||| || Sbjct 317214 TCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCC 317273 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| || |||||| || | ||| || ||| Sbjct 317274 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTC 317333 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| || || |||||||||||||| Sbjct 317334 TTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || || || ||||| || | | | | || || |||||||| |||||||| Sbjct 317402 CTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAA 317461 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || |||||||| | || | || |||||||| | || || |||||| Sbjct 317462 GATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATT 317521 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | ||||| |||| || || |||||||| || | ||||| || Sbjct 317522 GTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGAC 317581 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 317582 GAAGATCTGCATG 317594 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/208 (70%), Gaps = 9/208 (4%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||||||||| || || | | | | | | || || || || || || ||||| Sbjct 317972 TCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCAGCGAAA 318031 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || || ||||| | || | |||||||| || | ||||| ||||| || Sbjct 318032 ATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTTGAC--AT 318089 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | ||||| ||| | ||| || || | ||| || |||||||| ||||| || || Sbjct 318090 --TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTTTT 318147 Query 34963 TACAAAGATCTGCATGATAGTGGACTAG 34990 ||||| |||||||| | |||| |||| Sbjct 318148 GACAAATATCTGCATTCTCGTGG-CTAG 318174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684603228235