Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1955 159 3e-34 seq2 123 2e-23 >seq1955 Length=526780 Score = 159 bits (176), Expect = 3e-34 Identities = 157/201 (78%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 128508 GGTCGACTCTTTCTGGATGTTGTAATC--CGAGAGAGTACGACCGTCCTCGAGCTGCTTT 128451 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | ||||| |||||||| |||||||||||||| |||||||| ||| || | Sbjct 128450 CCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCC 128391 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| |||||| | || ||| || |||| ||||| ||| ||||| || ||| Sbjct 128390 TTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGA 128331 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || ||||||||||||||| Sbjct 128330 GTCTTGACGAAAATCTGCATG 128310 Score = 131 bits (144), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| ||||| ||||| || ||| ||| ||||||||| ||||||| Sbjct 127487 GTGGACTCCTTCTGGATATTATAATCAGACAACGT--ACGGCCGTCCTCGAGTTGCTTGC 127430 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| || |||||||||||||| ||||| |||||||| |||||| || Sbjct 127429 CAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCT 127370 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || |||| ||||| || |||||||||| | Sbjct 127369 TGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGG 127310 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || || |||||| Sbjct 127309 TCTTGACAAAGATTTGCATG 127290 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| || | ||| | | | ||||||||||||||||| Sbjct 127770 GTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCA-TCCTCGAGCTGCTTGCC 127712 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 127711 AGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 127652 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||||| | ||| || |||| |||| || ||||| || ||||| Sbjct 127651 GACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGT 127592 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 127591 CTTGACAAAGATTTGCATG 127573 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| || ||||| ||| || |||| | | | |||||||||||||||| Sbjct 128227 GGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCA-TCCTCGAGCTGCTTGC 128169 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| || ||||| |||||||| |||||||||||||| ||||| || Sbjct 128168 CGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCT 128109 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | || || |||| |||| || || || |||| | Sbjct 128108 TGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGG 128049 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 128048 TCTTGACGAAGATTTGCAT 128030 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||| ||| || || || ||||||||| | ||| | || |||||| Sbjct 128744 AAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCTTCGAGC 128685 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | |||||||||||||| ||||| || ||||| || ||| Sbjct 128684 TGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGAATC 128625 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| |||||| | || ||| || || | || | || |||||| Sbjct 128624 TTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTCTTGCCG 128565 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 128564 GTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| || || |||||||| || | | | | ||| |||||||| || ||| Sbjct 127999 GGTCGACTCCTTTTGGATATTGTAGTC--CGAAAGGGTACGGCCATCCTCGAGTTGTTTG 127942 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || || || ||||||||||| |||||||||||||| |||||| | Sbjct 127941 CCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCC 127882 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | ||||| | | ||| || || | |||| ||| ||||| || || Sbjct 127881 TTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGG 127822 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 127821 GTCTTGACAAAGATCTGCAT 127802 >seq2 Length=528078 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| |||||||| || ||||| ||||| | ||| ||| |||||| || Sbjct 317160 AAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACC-GTCCTCAAG 317218 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||||||| | || | ||||| ||||| || |||||||||||||| || ||| Sbjct 317219 CTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGGAT 317278 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | || ||| || |||| ||||| || || || Sbjct 317279 CTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTCCC 317338 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| || || |||||||| Sbjct 317339 GGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || || || || || |||||| || || | |||||||||||| Sbjct 317959 ATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTG 318018 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || || ||| ||||||| ||||| ||||||||||| || || ||||| || ||| || Sbjct 318019 TTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATC-TTGAATTT 318077 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | ||||| | || | ||||| | | |||||| |||| ||||| || || |||| Sbjct 318078 TGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGG 318137 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| || || |||||||| Sbjct 318138 TGAGAGTTTTGACAAATATCTGCAT 318162 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| ||||| || || | ||| ||| ||||||||||| || Sbjct 317687 GGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCC 317746 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||||||||||||| ||||| || || ||||| || |||||| ||| Sbjct 317747 AGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTT 317806 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | || || |||| || | ||| ||||| |||| ||| Sbjct 317807 GACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGT 317866 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 317867 CTTGACAAAGATCTGCAT 317884 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || |||||||| || || || |||||| || ||||| || Sbjct 317397 GTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCAAGTTGCTTCCCG 317456 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 317457 GCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCTTTG 317516 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || || | | || || || | || | || || ||||||| ||| Sbjct 317517 ACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTC 317576 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 317577 TTGACGAAGATCTGCATG 317594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408321700600