Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1112 89.7 1e-12 seq424 87.8 4e-12 >seq1112 Length=1085269 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || || || |||||| || || ||||| ||||| || ||| | || | |||| || Sbjct 231341 CTCGTCGCATTTGCTGCGGTCGAGGGTATCTTCTTCTCCGGTTCCTTTGCTTCTATTTTC 231400 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| |||||||| |||||||||||||| || |||| ||||| || | ||||| | Sbjct 231401 TGGCTCAAGAAGCGCGGATTGATGCCTGGCCTGACATTCTCCAACGAACTGATCTCTCGT 231460 Query 131981 GATGAAGCATTGCATACTGAATTTGCT 132007 || || | | |||| || || |||||| Sbjct 231461 GACGAGGGAATGCACACCGATTTTGCT 231487 >seq424 Length=76155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 110724 TATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| | ||||||||||| | || |||| |||| |||||||| ||||| || ||| Sbjct 60000 TATGTCGACCAAGGTGGTAACAAGCGACCTGGCGCATTCGCTATCTACCTCGAGCCGTGG 60059 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 || || ||| | || |||||| | || || ||||||||||| ||| |||||| | Sbjct 60060 CACTCGGATGTGTTCGAATTCCTCGATCTCCGTAAAAATCATGGAAAAGAAGAAGTTCGT 60119 Query 110841 GCACGTGATTTATTTTATGCAATGTGGAT 110869 || || || || || ||||| | ||||| Sbjct 60120 GCGCGCGACTTGTTCTATGCGCTCTGGAT 60148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186781399529465