Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1955 136 4e-27 seq2 125 7e-24 >seq1955 Length=526780 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAG 134566 ||||| || || |||||||| || |||||||||||| ||||| || | || ||||| Sbjct 128235 AGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACG-TGCGGCCATCCTCGAG 128177 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| ||||| ||||| || | || ||||||||||| || |||||||| || || ||||| Sbjct 128176 CTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAAT 128117 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || ||||| ||| | ||||| || ||||| || |||||||| || || || || Sbjct 128116 CTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCC 128057 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| |||||||| Sbjct 128056 AGTCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || || || || |||||||| || Sbjct 128537 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAG 128478 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| |||||||| || || ||||| || | ||||||||||||||| || Sbjct 128477 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 128418 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| ||||| ||| | ||||| || || || || Sbjct 128417 ATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACC 128358 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | ||| || |||||||| ||||| Sbjct 128357 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || || || || ||||| |||||||| Sbjct 127800 CCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAG 127741 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| ||||| || | |||||||| || || || Sbjct 127740 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGA 127681 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||||||||| || || Sbjct 127680 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACT 127621 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || | ||| || || || |||||||| Sbjct 127620 TCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 >seq2 Length=528078 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 ||||| || ||||| ||||| || || || ||||| | |||| | ||| |||||| Sbjct 317679 AGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGC 317738 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || || || ||||| || | |||||||| || || || || || || || || ||||| Sbjct 317739 TGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATC 317798 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 ||| ||||| ||| | |||||||||||||| || ||||| |||||||| || || Sbjct 317799 TTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCC 317858 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || || || || |||||| Sbjct 317859 GTCAAAGTCTTGACAAAGATCTGCATT 317885 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 |||||||||||||||||||| || ||| | ||| ||| ||||||||||| || Sbjct 317966 GTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCA 318025 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || ||||| | ||||| || ||||| || || || || || ||||||||||| ||| Sbjct 318026 GCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 318085 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | ||||| || || ||||| ||||| || || || || ||||| | |||| Sbjct 318086 ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTT 318145 Query 134697 TTAACGAAAATTTGCATT 134714 || || || || |||||| Sbjct 318146 TTGACAAATATCTGCATT 318163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505385354403800