Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1955 95.1 1e-14 seq2 93.3 4e-14 >seq1955 Length=526780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| |||||||||||||| | |||| | || |||||||| || || Sbjct 127770 GTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCA 127711 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || || || | || || || || ||||||| || Sbjct 127710 GCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 127651 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || ||||| ||||| |||| ||||| || ||||| Sbjct 127650 ACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTC 127591 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 127590 TTGACAAAGATTTGCAT 127574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 |||||||| || | ||||| ||||| || | || || ||||| || ||||| ||| Sbjct 128768 TTGCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCG 128709 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | ||||| | ||||||||||| || ||||| | || | ||||| || || || Sbjct 128708 GAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGT 128649 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| ||||| ||||| |||| | | || | ||||| | || || Sbjct 128648 GGGATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCG 128589 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| | || |||| ||||| || || || || || || || |||||| Sbjct 128588 ACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCATA 128538 >seq2 Length=528078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || |||||||| || || ||| || | | | | |||| |||||||| Sbjct 317959 ATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTG 318018 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| ||||||| |||||||| || || || | ||||| ||||| || || Sbjct 318019 TTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTT 318078 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | || | ||||| | | || || || || || || | || || || Sbjct 318079 GGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGT 318138 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 318139 GAGAGTTTTGACAAATATCTGCAT 318162 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||| ||||| | | |||| ||||||||||||| || || Sbjct 317688 GTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCA 317747 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || || || | ||||| ||||| ||||| || Sbjct 317748 GCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTTG 317807 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | ||| || || || || || | |||||||||| ||| Sbjct 317808 ACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTC 317867 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 317868 TTGACAAAGATCTGCAT 317884 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| ||||| || || | |||| |||| || Sbjct 317157 ACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTCA 317216 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | || | |||||||| || || || | || || ||||| | Sbjct 317217 AGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTGG 317276 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | || || || || || || || | || Sbjct 317277 ATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTTC 317336 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||||||||||||| |||||| Sbjct 317337 CCGGTGAGCGTTTTCACAAAGATCTGCATA 317366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923705596280