Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1112 87.8 2e-12 >seq1112 Length=1085269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 233/343 (68%), Gaps = 20/343 (6%) Strand=Plus/Minus Query 122568 GAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG--GCGT-GGATAGTTTCGGTAGT 122624 |||| ||| ||||||| ||||||| || ||||||| ||| ||| || |||| || Sbjct 231577 GAACTCTTGCTCAATCGCAACCGCTTC---CACGATGATGCGGCGGACTGTCTCGGG-GT 231522 Query 122625 G-GGTCTATTACGCAAAGTCTTGA-AGAGCTCCACG---GCAAACTCCTGGTGGAGACCC 122679 | || | || |||||| ||| ||| | | | ||||| || ||| | ||| Sbjct 231521 GAGGGCGTTTGCGCAAA----TGAGAGAACAAGAGGCAAGCAAAATCGGTGTGCATTCCC 231466 Query 122680 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTC 122739 || || || || || ||||| || ||||| || || ||||| | || |||||||| Sbjct 231465 TCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGGCCAGGCATCAATCCGCGCTTCTTG 231406 Query 122740 AACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 122798 | ||| |||||| ||| || || |||||||||||||||||||| || ||||| || Sbjct 231405 AGCCAGAAAATAGAAGCA-AAGGAACCGGAGAAGAAGATACCCTCGACCGCAGCAAATGC 231347 Query 122799 AAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTCG 122857 | || || ||||| || | | | ||| | | | ||| || | ||||| | | Sbjct 231346 GACGAGACGCTCGGCAAACGTTGAGCGACGGT-CGGAGATCCACTTGAGCGCCCAGTCAG 231288 Query 122858 CCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 ||||||||| || || || | ||| | |||||| || || || Sbjct 231287 CCTTCTTCTTGATGCACGGAATAGTCTCGATGGCATCGAACAA 231245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015788924000