Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 183 9e-41 seq1511 165 2e-35 seq1955 156 1e-32 seq1289 91.5 4e-13 >seq2 Length=528078 Score = 183 bits (202), Expect = 9e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| |||| | || |||||||| | || ||||| ||||| ||||| || || Sbjct 317363 CATACCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTC 317422 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| ||||| | || || |||||||| || || || ||||| || || ||||| ||||| Sbjct 317423 AGACAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGG 317482 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || |||||||| || ||||| ||||| ||||| | |||||| | ||| Sbjct 317483 AGGGATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTC 317542 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| |||| ||||||||||| | || || || || |||||||| Sbjct 317543 GACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||||| || || |||||||| ||||| | || || || ||||| | Sbjct 317677 CAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGA 317736 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || || ||||| ||||||||||| || || |||||||||| Sbjct 317737 GCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAA 317796 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | || || | ||| || || ||||||| ||||| | Sbjct 317797 TCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGC 317856 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || | || || ||||| ||||||||| Sbjct 317857 CCGTCAAAGTCTTGACAAAGATCTGCATT 317885 Score = 152 bits (168), Expect = 2e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||| | || || || |||||||| |||||||| || || |||| ||| || || || Sbjct 317957 AGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGC 318016 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 ||||| ||||| || || || || || || || ||||||||||| || ||||| |||||| Sbjct 318017 TGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATT 318076 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || ||||| || || | ||||| | || || || || || | ||||||||| Sbjct 318077 TTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCG 318136 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||| ||||||||| Sbjct 318137 GTGAGAGTTTTGACAAATATCTGCATT 318163 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | || || || ||||||||||| ||||||||||| || Sbjct 317139 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAA 317198 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || ||||| || || || || ||||| | || || || ||||| || Sbjct 317199 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGG 317258 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| |||||||| || || || || || || ||||| | ||||| | || || Sbjct 317259 ATGCCTTCCTTATCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACC 317318 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 317319 TCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 >seq1511 Length=901688 Score = 165 bits (182), Expect = 2e-35 Identities = 466/708 (66%), Gaps = 21/708 (3%) Strand=Plus/Plus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 || |||| || ||||||||||| ||||||||||| ||||| || || || |||||| | Sbjct 83516 TGCGTTGGAGTATGGCAAAATGACCGTGTAGAAATCATTGCCAACGACCAGGGTAACCGC 83575 Query 349292 ACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAA 349351 || || || || || || | || | || ||||||||| | || || ||| |||| || Sbjct 83576 ACGACTCCTTCGTATGTGTCCTTCTCGGACACTGAGCGTCTCATCGGAGATGCTGCGAAG 83635 Query 349352 AATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGA 349411 || |||| || || || || || || || || || || || |||||||| | Sbjct 83636 AACCAAGTCGCGATGAACCCGGTGAACACCGTGTTCGACGCCAAACGTCTTATTGGACGC 83695 Query 349412 AGTTTTTCTGACAAATCTA--CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTC 349469 | || ||| | | | ||||| ||||| || || || || || | |||| Sbjct 83696 CGCTT---CGACGATGCGAGGTCCAATCGGATCTCAAGCACTTCCCCTTCAAGGTTG--- 83749 Query 349470 CAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTT 349528 ||| | || | || || |||| || ||||| ||| || || || || | Sbjct 83750 AAAACAAGGGCGGCAAGCCGGTTATCAGCGTCGAATACCGAGGCGAGACCAA---GATCT 83806 Query 349529 TTA--CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCAT 349586 ||| ||||| || || || || ||||| | | || |||||||||| ||| ||| | | Sbjct 83807 TTACGCCCGAGGAGATCTCGTCCATGGTCCTCCTCAAGATGAAGGAAACTGCCGAATCTT 83866 Query 349587 ATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCC 349646 || | || || | | | || || || || || || || || || || || | | Sbjct 83867 ATCTCGGAACGACCATCAACAACGCGGTCATCACCGTCCCGGCTTACTTCAACGACTCGC 83926 Query 349647 AGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTA 349706 ||||| || || || ||||| || || | || | || || || | || || | Sbjct 83927 AGCGTCAGGCCACCAAGGATGCCGGTGTGATCTCTGGTCTCAACGTCCTCCGTATCATCA 83986 Query 349707 ATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCA---AGaaa 349763 | || ||||| || || || || || ||||| || || || || | ||| ||| Sbjct 83987 ACGAGCCCACCGCCGCTGCCATCGCCTATGGTCTCGACAA---GAAGGTCCAGGGCGAAC 84043 Query 349764 aaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTG 349823 || |||| || || ||| | || || || ||||| ||||| || || | || | | Sbjct 84044 GCAACGTTCTCATCTTCGATCTCGGAGGAGGAACTTTCGATGTCTCCCTCTTGACCATCG 84103 Query 349824 AAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATT 349883 |||| || ||||| ||||| || || || || || || || ||||| ||||| ||||| | Sbjct 84104 AAGAAGGTATTTTCGAAGTCAAGGCTACCGCCGGCGACACCCATCTCGGTGGTGAAGACT 84163 Query 349884 TTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 |||| || |||||||| || ||||| | ||||| ||||| |||| Sbjct 84164 TTGACAACCGTCTCGTCAATCACTTTGTCCAGGAATTCAAGCG-CAAG 84210 >seq1955 Length=526780 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || ||||| ||||| |||||||| |||||||| || || Sbjct 127804 CATACCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTC 127745 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||||||||| || || ||||| ||||| Sbjct 127744 CGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGG 127685 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || ||||| |||| || || | || Sbjct 127684 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTC 127625 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || || || || ||||| || ||||| Sbjct 127624 GACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || ||||| || || || |||||||| || || || ||||| Sbjct 128541 CATACCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATC 128482 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| ||||| |||||||| || Sbjct 128481 CGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGG 128422 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| ||||| || || || || ||||||| ||||| | || Sbjct 128421 AGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTC 128362 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || ||||||||||| Sbjct 128361 GACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | || ||||| || || || ||||| ||||| ||||| | Sbjct 128036 TTTGCATCCCACCGCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGT 127977 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || |||||||| ||||||||||| |||||||| || | Sbjct 127976 AGTCCGAAAGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGT 127917 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| ||||| || ||||| || || || || ||||| || || | || || | Sbjct 127916 CGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAG 127857 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || | ||||| || || || || || ||||| |||||||| Sbjct 127856 ACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 136 bits (150), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| ||||| || ||| ||||| || || ||||| || | || ||||||||| Sbjct 128749 AGACCAAG-TGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCT 128691 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| | || ||||| || || || ||||| || ||||| Sbjct 128690 TCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 128631 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || |||||||||| || || | || ||||| | |||| ||| Sbjct 128630 TGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTC 128571 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || ||||||||||| Sbjct 128570 TTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || || |||||||||||||| || || || || || || | Sbjct 127498 CAAGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGA 127439 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||| || ||||| || || ||||||||||| || |||||||| || || || || || | Sbjct 127438 GTTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGA 127379 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || || | ||| || | || || || || || | ||||| | Sbjct 127378 TCTTGGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGC 127319 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || || ||||| || ||||| Sbjct 127318 CGGTCAAGGTCTTGACAAAGATTTGCAT 127291 Score = 127 bits (140), Expect = 6e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || || || || || || || || || || || || || ||||| || | Sbjct 128237 CAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGA 128178 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||| || ||||||||||| |||||||| ||||| || ||||||| Sbjct 128177 GCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAA 128118 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | ||||| || || || ||||| | || || | ||| || || || || | ||||| | Sbjct 128117 TCTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCC 128058 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || || || || || ||||| Sbjct 128057 CAGTCAAGGTCTTGACGAAGATTTGCAT 128030 >seq1289 Length=1058660 Score = 91.5 bits (100), Expect = 4e-13 Identities = 254/387 (66%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| ||||||| || || ||||||||||| |||||| Sbjct 584032 GTTCCTGCTTACTTCAATGACTCCCAGCGCCTGGCTACTAAAGATGCTGGTGCCATTGCT 584091 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || | | || || || || || ||||| || || ||||| ||||| || Sbjct 584092 GGCCTCGAGGTCTTGCGTATTATCAACGAGCCTACTGCCGCTGCTATTGCCTATGGTCTC 584151 Query 349742 GATAA--AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 ||| | ||| || ||| || ||| || | || || || || || || || |||| Sbjct 584152 GATCAGCAATCGAAAAC--AGAGAAGAATGTTTTGATCTTCGACTTGGGGGGAGGGACTT 584209 Query 349800 TTGATGTATCAC----TACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 | ||||| || | || || |||| | || |||||| || || || || ||| Sbjct 584210 TCGATGTCTCTCTCCTTAATATCACT----GGTGGTGTTTTTGCCGTCAAGGCTACCGCT 584265 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || |||||||| || || || || || || |||| || || || | Sbjct 584266 GGTGACACCCATCTTGGCGGCGAGGACTTCGACAACACTCTCCTTGAACACTTCAAGGCA 584325 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 || || ||||| || | ||| |||||| ||| ||||| | || || ||||| || Sbjct 584326 GAGTTCAAGCGCAAAACCAAACATGATATCTCCGATGATCCTCGTGCCATCCGTCGTCTG 584385 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGT 350002 | | || || || || || |||||| Sbjct 584386 CGTAGCGCTTGCGAGCGCGCCAAGCGT 584412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515214309683195