Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1112 113 5e-20 seq424 84.2 2e-11 >seq1112 Length=1085269 Score = 113 bits (124), Expect = 5e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| | |||||| | || ||||| |||| | || || ||||||||||| || || || Sbjct 231329 TTTGCCGAGCGTCTCGTCGCATTTGC-TGCGGTCGAGGGTATCTTCTTCTCCGGTTCCTT 231387 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | |||||||||||||||| ||||| || | ||||| ||||||| ||||||||||| Sbjct 231388 TGCTTCTATTTTCTGGCTCAAGAAGCGCGGATTGATGCCTGGCCTGACATTCTCCAACGA 231447 Query 60092 GCTGATTTCCCGGGACGAGGG 60112 ||||| || || |||||||| Sbjct 231448 ACTGATCTCTCGTGACGAGGG 231468 >seq424 Length=76155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||| || ||| | || || ||||||||||| || ||| | | || || | || Sbjct 59689 TTCACTCATGCGTCACCAACGCTTTTCAACGCTGGCACGCCCCATCCCCAACTATCTTCT 59748 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAA 19311 || ||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct 59749 TGCTTCCTCGTGGCGATGAAGGATGACAGCATCGACGGCATTTACGACACGCTGAA 59804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548510641203600