Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq535 98.7 1e-15 seq424 86.0 7e-12 >seq535 Length=83846 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 124673 AATCTTGCGCGTCACAAAC--TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 ||||||||||||||||||| ||| || || ||| |||||||||||||| || Sbjct 3254 AATCTTGCGCGTCACAAACGTTCGC--CCACGACGCGGGCTCTCGTGGTTGAACAAGATC 3197 Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790 || | ||||| |||| || |||| |||||| ||||| || ||||| ||| || || Sbjct 3196 CCGTTGCACGCGTACATGCCATACGCCTCGCGATAGTTGACGGTGATCCAGTACGCATAG 3137 Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 ||||||| ||| || || || || |||||||| || ||| |||| Sbjct 3136 AGCTTGGCCACACCGTATGGCGAGCGAGGGTAGAAGGGAGTGGTTTC 3090 >seq424 Length=76155 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||| ||||| || | || | | ||||| || || ||| |||| |||||| Sbjct 59958 GGTATCGTGCCCATGCTGCGTGCCTACGATGCAACGGCTCGTTATGTCGACCAAGGTGGT 60017 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | ||||| ||||||||||||||||||||| | || | | || Sbjct 60018 AACAAGCGACCTGGCGCATTCGCTATCTACCTCGAGCCGTGGCACTCGGATGTGTTCGAA 60077 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTAC 53670 || ||||| || ||| ||||| || | ||||| | || ||| || ||| |||| Sbjct 60078 TTCCTCGATCTCCGTAAAAATCATGGAAAAGAAGAAGTTCG-TGCGCGCGACTTGTTCTA 60136 Query 53671 AGCTCTGTGGATTCCGGACCTCTT 53694 || || ||||| || || ||||| Sbjct 60137 TGCGCTCTGGATCCCCGATCTCTT 60160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 || || || || || | ||||| || ||||||||||| ||| || || || | || Sbjct 59686 TATTTCACTCATGCGTCACCAACGCTTTTCAACGCTGGCACGCCCCATCCCCAACTATCT 59745 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 |||||||| |||||||||||||||||| ||||||||||| ||||| ||||| || Sbjct 59746 TCTTGCTTCCTCGTGGCGATGAAGGATGACAGCATCGACGGCATTTACGACACGCTGAA 59804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201874987000