Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1955 194 2e-44 seq2 176 5e-39 seq1112 113 5e-20 seq535 100 3e-16 seq1901 82.4 9e-11 seq1724 82.4 9e-11 >seq1955 Length=526780 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || | ||||||||||| Sbjct 127802 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACGTTGGAGGTTGAGTCTTCG 127861 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || ||||||||||| || |||||||| ||||| Sbjct 127862 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAA 127921 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| || ||||||||||||| |||||||| | ||||| ||| Sbjct 127922 CAACGTCTTATCTTTGCTGGCAAACAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 127981 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || || ||| | ||||| |||||||| Sbjct 127982 ATCCAAAAGGAGTCGACCCTCCACCTTGTCCTTCGTCTGCGCGGTGG 128028 Score = 183 bits (202), Expect = 3e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||||||||||||||| | |||||||||||||| || || ||||| ||||| Sbjct 127288 ATCATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCG 127347 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||| | || | ||||| || || || ||||||||||| |||||||| ||| Sbjct 127348 TCGGATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGAC 127407 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| ||||| ||||| |||||||||||||| | ||||| | | || ||| Sbjct 127408 CAGCAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGTCTGATTAT 127467 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCT 27611 ||| |||| ||||| |||||||| || || Sbjct 127468 AATATCCAGAAGGAGTCCACTCTCCACCT 127496 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||| Sbjct 127574 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAAGTCGAGTCGTCC 127633 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 127634 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 127693 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| |||||||||| || || || | ||||| ||| Sbjct 127694 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAT 127753 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||||| ||||| ||| | ||||| || || || Sbjct 127754 ATTCAGAAAGAGTCGACTCTCCATCTCGTCCTTCGTCTCCGTGGCGG 127800 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||||||||||||||||||||||| | || || ||||| Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || ||||| || ||||||||||| || || |||||| Sbjct 128599 GACACGATTGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCAG 128658 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || ||||| ||||| |||| || ||||| | || || || Sbjct 128659 CAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAAC 128718 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||| ||||| | ||||||||||| || || || Sbjct 128719 ATCCAAAAGGAGAGCACCCTTCACTTGGTCTTGCGTCTCCGTGGAGG 128765 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || || ||||| ||||| | Sbjct 128311 ATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 128370 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| ||||| |||||||||||||| || ||||| || ||| Sbjct 128371 GACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 128430 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| |||||||| | |||||| || | || || || Sbjct 128431 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAAC 128490 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | ||||| || || || Sbjct 128491 ATCCAGAAAGAGTCGACCCTCCACCTTGTCCTCCGTCTCCGTGGCGG 128537 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || |||||||| ||||| ||||| || || Sbjct 128030 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCG 128089 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | |||||||| |||||||||||||| || |||||||| || ||| Sbjct 128090 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 128149 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| || ||||| |||||||||| || || | | ||||| || Sbjct 128150 CAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAAC 128209 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| |||||||| || ||||| || Sbjct 128210 ATCCAGAAGGAATCGACCCTTCACCT 128235 >seq2 Length=528078 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| |||||||||||||||||||| || || | Sbjct 317593 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTCT 317534 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || || |||||||||||||| || || ||||| |||||| Sbjct 317533 GATACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 317474 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || |||||||| ||||| | | || | | ||||| ||| Sbjct 317473 CAGCGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTACAAT 317414 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || | ||||| ||| | || || |||||||| Sbjct 317413 ATCCAAAAGGAGTCGACGTTGCATCTTGTCCTTCGCCTACGCGGTGG 317367 Score = 170 bits (188), Expect = 2e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | || |||||||| ||||| || ||||| || || Sbjct 317885 AATGCAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTC 317826 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || |||||||| |||||||| |||||||| ||||| Sbjct 317825 CGACACTATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGGATTCCTCCTGACCA 317766 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| ||||| ||||| || | || ||||| | |||||||| Sbjct 317765 GCAGCGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGCCGCACCCTCTCTGACTATAA 317706 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 | |||| ||||| ||||| ||||| || Sbjct 317705 TATCCAGAAGGAGTCCACCCTTCACCT 317679 Score = 165 bits (182), Expect = 9e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 318163 AATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTC 318104 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| |||||||| || ||||||||||||||||| ||||| Sbjct 318103 TGACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCA 318044 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || ||||| |||||||| || |||||||| | | ||| | | || ||||| Sbjct 318043 ACAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAA 317984 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAG 27613 | |||||||||||||| | ||||||| Sbjct 317983 CATTCAAAAGGAATCCACCTTGCATCTAG 317955 >seq1112 Length=1085269 Score = 113 bits (124), Expect = 5e-20 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||| || |||||| | ||| | || |||||| ||||| Sbjct 231281 AAGAAGGCTGACTGGGCGCTCAAGTGGATCTCCGACCGTCGCTCAACGTTTGCCGAGCGT 231340 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || ||||| || || || || ||||| || || || || |||||||||| Sbjct 231341 CTCGTCGCATTTGCTGCGGTCGAGGGTATCTTCTTCTCCGGTTCCTTTGCTTCTATTTTC 231400 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || ||||||| || ||| | || || ||||| ||||||||||| Sbjct 231401 TGGCTCAAGAAGCGCGGATTGATGCCTGGCCTGACATTCTCCAACGAACTGATCTCTCGT 231460 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| | ||| || ||||| Sbjct 231461 GACGAGGGAATGCACACCGATTTTGC 231486 >seq535 Length=83846 Score = 100 bits (110), Expect = 3e-16 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| || ||||| |||||||| |||||||| |||||||| || || || || Sbjct 3054 GAGTTGTACGGAAAGGTCGTTGAGACGCCTCAGTCGGAAACCACTCCCTTCTACCCTCGC 3113 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || || | ||| | | ||||||||||| ||| ||||| || ||||| Sbjct 3114 TCGCCATACGGTGTGGCCAAGCTCTATGCGTACTGGATCACCGTCAACTATCGCGAGGCG 3173 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCT 24923 |||| || || || |||||||| || |||||||||| ||| |||||| || | Sbjct 3174 TATGGCATGTACGCGTGCAACGGGATCTTGTTCAACCACGAGAGCCCGCGTCGTGGGC-- 3231 Query 24924 GAA--TTTGTTACACGAAAGATT 24944 ||| ||||| || || |||||| Sbjct 3232 GAACGTTTGTGACGCGCAAGATT 3254 >seq1901 Length=11604 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || |||||||| || || Sbjct 8516 ATGCAGATATTCGTCAAAACCCTAACGGGGAAGACGATCACCCTTGAGGTGGAATCTTCC 8457 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || ||||| || |||||||| || || || |||||| Sbjct 8456 GATACTATCGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCCCCCGACCAG 8397 Query 27526 CAGCG 27530 ||||| Sbjct 8396 CAGCG 8392 >seq1724 Length=14637 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || |||||||| || || Sbjct 11541 ATGCAGATATTCGTCAAAACCCTAACGGGGAAGACGATCACCCTTGAGGTGGAATCTTCC 11482 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || ||||| || |||||||| || || || |||||| Sbjct 11481 GATACTATCGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 11422 Query 27526 CAGCG 27530 ||||| Sbjct 11421 CAGCG 11417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295678862800