Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1955 150 1e-31 seq2 122 5e-23 >seq1955 Length=526780 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | |||||||| ||||| || || |||||||||||||| ||||| ||||| Sbjct 128769 GTTGCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATC 128710 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 ||||| || ||| | ||||| || || || |||||||| || || ||||| ||||| || Sbjct 128709 GGAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGG 128650 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCT 34654 || | ||||||||| ||| ||| || | || ||| || ||| ||||| | || Sbjct 128649 TGGGATTCCCTCCTTATCT-TGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACT 128591 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||||| || || || || ||||| | ||| || || ||||||||||| Sbjct 128590 CGACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| || ||| || || ||||| ||||| || Sbjct 128537 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAG 128478 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || | |||||| || || || || Sbjct 128477 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 128418 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | || ||| | ||| ||||| | ||| || Sbjct 128417 ATGCCCTCCTTGTCCTGGAT-TTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGAC 128359 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | || || || |||||||||||| Sbjct 128358 CTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 >seq2 Length=528078 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || ||| ||||| || |||||||| ||||| || || Sbjct 317148 AGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGA 317207 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || || ||||||||||| || || | || ||| Sbjct 317208 CCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCC 317267 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || ||| | ||| ||||| | ||| || || | ||| Sbjct 317268 TTATCCTGGATC-TTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGT 317326 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | |||||||||||| |||||||| Sbjct 317327 GATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 109 bits (120), Expect = 3e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||||||||| || | |||| | |||| || || |||||||| || || Sbjct 317972 TCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCAGCGAAA 318031 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||||||||||| || || | ||||||||| ||| ||| ||| | || || | Sbjct 318032 ATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCT-TGAATTTTGGCCTTGACATT 318090 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| |||||| || | ||| ||||| || ||||| | ||||| || Sbjct 318091 GTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTTTTGAC 318150 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 318151 AAATATCTGCAT 318162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721679141145