Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1955 143 2e-29 seq2 141 8e-29 >seq1955 Length=526780 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| ||||||| | ||||| || | || Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || |||||||| || || || || |||||||| || Sbjct 128599 GACACGATTGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCAG 128658 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| || | ||||| | ||| |||||||||||||| Sbjct 128659 CAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAAC 128718 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || ||||||||| ||| | || ||||| |||||| | || || |||| Sbjct 128719 ATCCAAAAGGAGAGCACCCTTCACTTGGTCTTGCGTCTCCGTGGAGGCA 128767 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || |||||| | || || || || || || | || Sbjct 128310 CATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 128369 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 128370 TGACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCA 128429 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || | || ||| || || | || |||||||| Sbjct 128430 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAA 128489 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || || ||||||||| Sbjct 128490 CATCCAGAAAGAGTCGACC 128508 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | || || || | || Sbjct 127802 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACGTTGGAGGTTGAGTCTTCG 127861 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| |||||||| || ||||| ||| Sbjct 127862 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAA 127921 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||||||| | || || | ||| |||| || ||||| Sbjct 127922 CAACGTCTTATCTTTGCTGGCAAACAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 127981 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||||||| | || | || | ||| |||| ||||| || Sbjct 127982 ATCCAAAAGGAGTCGACCCTCCACCTTGTCCTTCGTCTGCGCGGTGGGAT 128031 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || ||||||||||| |||| || || || || || |||| Sbjct 127290 CATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCGTC 127349 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || || |||||||| || ||||| || ||||| || Sbjct 127350 GGATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCA 127409 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 || ||| | || | ||| ||||| ||| | || ||| | || |||| || ||||| | Sbjct 127410 GCAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGAC-GGCCGTACGTTGTCTGATTATA 127468 Query 27166 ACATTCAAAAGGAGTCGAC 27184 | || || |||||||| || Sbjct 127469 ATATCCAGAAGGAGTCCAC 127487 >seq2 Length=528078 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| ||||||| ||| ||||||||||||| || ||| |||| Sbjct 317594 CATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTC 317535 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | |||||| || ||||| ||||| |||||||| || || || || Sbjct 317534 TGATACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 317475 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || ||| | || ||| | ||| | || || ||||| Sbjct 317474 GCAGCGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTACAA 317415 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| || ||| | || | || | || ||||| || Sbjct 317414 TATCCAAAAGGAGTCGACGTTGCATCTTGTCCTTCGCCTACGCGGTGGTAT 317364 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| ||||| ||| | || || || || ||||| | || Sbjct 318162 ATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTCT 318103 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||||||||| || || || || || ||||| ||| Sbjct 318102 GACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCAA 318043 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || ||||| | || ||| | ||| | |||||||| ||| Sbjct 318042 CAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAAC 317983 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||||||||| || ||||| ||| Sbjct 317982 ATTCAAAAGGAATCCACCTTGCAT 317959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907173668800