Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1955 194 4e-44 seq2 188 2e-42 seq1418 89.7 1e-12 seq1296 89.7 1e-12 >seq1955 Length=526780 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| |||||||| || || |||| |||||| | ||||| Sbjct 128013 AGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCC 127954 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || |||||||| ||||||||||| ||||||| |||||||||||| Sbjct 127953 TCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCC 127894 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || |||||||| | ||||| ||| Sbjct 127893 TGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTC 127834 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| ||||| | |||||| Sbjct 127833 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| |||||||| || || || || |||| || || | ||||| Sbjct 127785 AGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCC 127726 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||||||||||| |||||||||||| Sbjct 127725 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 127666 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || || ||||||||||| ||| Sbjct 127665 TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTC 127606 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | ||||| Sbjct 127605 TTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || |||||||| |||||||| ||||||| || || | || || Sbjct 128522 AGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCC 128463 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || || || ||||| | || ||||||||| Sbjct 128462 TCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 128403 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || || ||||||||| || |||||||| ||||| ||| Sbjct 128402 TGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTC 128343 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||| || || | |||||| Sbjct 128342 TTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 154 bits (170), Expect = 3e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||||||||| || || || || |||||||| || || | | || | ||||| || | Sbjct 128237 CAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGA 128178 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||||||| || ||||| |||||||| || || ||||||| |||||||||||||| | Sbjct 128177 GCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAA 128118 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| || ||||| || |||||||| || ||| |||||||||||||| ||||| | Sbjct 128117 TCTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCC 128058 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || | ||||| || || | ||||| Sbjct 128057 CAGTCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 ||||||| ||||||||||| || ||||| |||||||| | | || | || || || | Sbjct 127498 CAAGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGA 127439 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 | |||||||| ||||| || || ||||| ||||| ||||||| || |||||||| |||| Sbjct 127438 GTTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGA 127379 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| || ||||| |||||||| || || || |||||||| ||||| ||||| | Sbjct 127378 TCTTGGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGC 127319 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || | ||||| ||||| | ||||| Sbjct 127318 CGGTCAAGGTCTTGACAAAGATTTGCAT 127291 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | |||||| ||| ||| ||||||||||| ||||| | |||||| | |||||||| Sbjct 128748 GACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCTTC 128689 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| || ||||| | || || ||||| || || | ||| ||||| || || Sbjct 128688 GAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTG 128629 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| |||||||| || || ||||| ||| || || || | || || ||||| Sbjct 128628 AATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTCTT 128569 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || | |||||| Sbjct 128568 GCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 >seq2 Length=528078 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || |||||||||||||| |||||||||| ||| || | || || Sbjct 317154 AGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCC 317213 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || ||||||||||| || | |||||||| ||| Sbjct 317214 TCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCC 317273 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||||||| || |||||||| ||||||||| Sbjct 317274 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTC 317333 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 317334 TTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||||||||| |||||||| || ||||| ||||| || | ||||| | || ||||| | Sbjct 317677 CAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGA 317736 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 ||||||| || || ||||| || || || ||||||||||||| || ||||| ||||| | Sbjct 317737 GCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAA 317796 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 ||||| || || || ||||| ||||| || ||| |||||||| || || ||||| | Sbjct 317797 TCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGC 317856 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||| | |||||| ||||| | ||||||| Sbjct 317857 CCGTCAAAGTCTTGACAAAGATCTGCATT 317885 Score = 163 bits (180), Expect = 7e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||| ||||||||||| | | ||| || || || || ||||| || || Sbjct 317966 GTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCA 318025 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || ||||| |||||||| ||||||| ||| ||||| || || || || || Sbjct 318026 GCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 318085 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || |||||||||||||| || |||||||| |||||||||||||| |||||||| Sbjct 318086 ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTT 318145 Query 211098 TTTACAAACACCTGCATT 211115 || ||||| | ||||||| Sbjct 318146 TTGACAAATATCTGCATT 318163 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || | || ||||| |||||||| || || || | | ||||| || || Sbjct 317382 AGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCC 317441 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| || || || ||||||||||| | |||||||||||| Sbjct 317442 TCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 317501 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || || || ||||| ||||| ||| ||||| ||||| || ||| Sbjct 317502 TGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTC 317561 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| || || | |||||| Sbjct 317562 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 >seq1418 Length=35037 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || |||||||| || |||| || || | ||| || Sbjct 21736 AGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCC 21795 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| || ||||| |||||||| ||||| || || Sbjct 21796 TCGAGCTGCTTGCCCGCAAAGATCAGGCGTTGCTGGTCGGGGGG 21839 >seq1296 Length=48495 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || |||||||| || |||| || || | ||| || Sbjct 4823 AGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCC 4882 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| || ||||| |||||||| ||||| || || Sbjct 4883 TCGAGCTGCTTGCCCGCAAAGATCAGGCGTTGCTGGTCGGGGGG 4926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159121331373725