Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq1955 91.5 1e-13 >seq2 Length=528078 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||||||||| ||||||||||| | ||| || || |||| || Sbjct 317156 CACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTC 317215 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| |||||||| || || | ||||| ||||| |||||| | || || || ||| Sbjct 317216 AAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGG-ATGCCTTCCTTATCCT 317274 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| || | ||| | | | || || ||||| || || | ||||| | Sbjct 317275 GGATCTTCGCCTTCA-CGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTC 317333 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||| |||||||| ||||| Sbjct 317334 TTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 >seq1955 Length=526780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || ||||||||||| | | || || |||| || || || Sbjct 127493 TGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGC 127434 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || ||||| |||||||||| || | || ||| ||||| ||| || Sbjct 127433 TTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 127374 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||||| |||||| || || | |||||| | || || || Sbjct 127373 GCCTTGA-CGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGT 127315 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||||||||| Sbjct 127314 CAAGGTCTTGACAAAGATTTGCAT 127291 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| | | || || ||||| || || |||||||| ||||| || || ||||||| Sbjct 128766 GCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGA 128707 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || || | || || ||||| ||||| ||||| || | ||||||||||||| || Sbjct 128706 AAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGG 128647 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| || || || ||| || | | | | ||| || ||||| || Sbjct 128646 GATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGAC 128587 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||| ||| | || || || ||||| || || || || ||||| Sbjct 128586 TTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || ||||| || || | || || || | || || ||||| ||||| ||||| Sbjct 127765 CTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 127706 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || || |||||| ||| || |||| | Sbjct 127705 GATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 127646 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||| ||| |||||| || || | |||||| | || || || || || || || Sbjct 127645 ATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGAC 127586 Query 39273 AAAGATTTGCAT 39284 |||||||||||| Sbjct 127585 AAAGATTTGCAT 127574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| | || || || |||| || ||||| || || ||||| Sbjct 128502 CTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAA 128443 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||| |||| || | || ||| |||||| ||||||| |||| ||| Sbjct 128442 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGA-CGT 128384 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| || ||||| || || | ||||| | || ||||| || || || | Sbjct 128383 TGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 128324 Query 39272 CAAAGATTTGCAT 39284 | || || ||||| Sbjct 128323 CGAAAATCTGCAT 128311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534789545345