Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1955 163 7e-35 seq2 145 2e-29 >seq1955 Length=526780 Score = 163 bits (180), Expect = 7e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || ||||||| |||||| || | | || | ||||| Sbjct 128013 AGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCC 127954 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct 127953 TCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCC 127894 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||| ||||| || | || || || |||||||| ||| Sbjct 127893 TGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTC 127834 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 127833 TTGCCCGT 127826 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||||||||||||||| || || |||| ||| ||||| | ||| || | || || || | Sbjct 127498 CAAGGTGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGA 127439 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 | ||||| |||||||| || || ||||| |||||||| ||||| || ||||||||||||| Sbjct 127438 GTTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGA 127379 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || |||||||| || || | || || || | ||||| ||||||| Sbjct 127378 TCTTGGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGC 127319 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | || | |||||| Sbjct 127318 CGGTCAAGGTCTTGACAAAGATTTGCAT 127291 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || || ||||| || |||| ||||| |||| ||| || | ||||| || | Sbjct 128237 CAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGA 128178 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || || ||||| || ||||| || ||||| ||||| ||||||||||| || | Sbjct 128177 GCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAA 128118 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || || |||||||| || | ||| || || | ||||| ||||| | Sbjct 128117 TCTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCC 128058 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | ||| | |||||| Sbjct 128057 CAGTCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| || ||||| || | |||||| || | | ||| | ||||| Sbjct 127785 AGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCC 127726 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||| ||||||||||| Sbjct 127725 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 127666 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 127665 TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTC 127606 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | || | |||||| Sbjct 127605 TTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || ||||| |||| |||||||| | | ||| | || || Sbjct 128522 AGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCC 128463 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || || ||||| || || || |||||||| Sbjct 128462 TCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 128403 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || || ||||| |||| || || || | ||||| ||| Sbjct 128402 TGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTC 128343 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| || | ||| | ||||| Sbjct 128342 TTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 >seq2 Length=528078 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| ||||| | || ||||||| ||| |||||||| || || ||||| || ||| Sbjct 317966 GTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCA 318025 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || || || ||||||||||| ||||| || ||||| ||||| || || ||| Sbjct 318026 GCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 318085 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||||||||| || | ||||| || | ||||||||||| || || | |||| Sbjct 318086 ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTT 318145 Query 225697 TTTATGAACACTTGCATT 225714 || | || | |||||| Sbjct 318146 TTGACAAATATCTGCATT 318163 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||||| || || |||| ||| || || | | || | || ||||| | Sbjct 317677 CAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGA 317736 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||||||||| ||||| || || || ||||| || ||||| || ||||| || || | Sbjct 317737 GCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAA 317796 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 ||||| ||| ||| ||||| ||||| || | ||| || || | || || ||||||| Sbjct 317797 TCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGC 317856 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||| || | || | |||||| Sbjct 317857 CCGTCAAAGTCTTGACAAAGATCTGCATT 317885 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || |||||||||| ||| ||||| | | ||| | || || Sbjct 317154 AGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCC 317213 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||| |||||||| || || || |||||||| || Sbjct 317214 TCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCC 317273 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || |||||||| |||| || || || | ||||||||| Sbjct 317274 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTC 317333 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||||| Sbjct 317334 TTCCCGGTGAGCGTTTT 317350 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || | || || || ||||||| |||||| || | ||| || || || || Sbjct 317382 AGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCC 317441 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || |||||||| |||||||| || || || ||||| || || || ||||||||||| Sbjct 317442 TCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 317501 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| || ||||| || || | ||| || || | || || ||| Sbjct 317502 TGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTC 317561 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 317562 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192499648233110