Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 143 6e-29 seq1955 118 2e-21 >seq2 Length=528078 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| | || ||||| |||||||| ||||| || | || || || || || Sbjct 317382 AGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCC 317441 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||||||||| |||| ||||||||| | | ||| |||||||| || Sbjct 317442 TCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 317501 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||||| | || | | | || || || || |||||||||||||| Sbjct 317502 TGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTC 317561 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||||| |||||| Sbjct 317562 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||| | || || || ||||| ||||| ||||||| || |||||||| || || || Sbjct 317957 AGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGC 318016 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||| || ||||| || || | ||| ||||| | | ||||| ||||| ||||||||| Sbjct 318017 TGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATT 318076 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| | || | | |||| ||| ||| || || || || || || || || Sbjct 318077 TTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCG 318136 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || | ||||||| Sbjct 318137 GTGAGAGTTTTGACAAATATCTGCATT 318163 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || |||||||||||||| || ||||| | | ||| | Sbjct 317147 GAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCG 317206 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || |||||||| | | ||| ||||| | | ||| ||||| Sbjct 317207 ACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTC 317266 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | || | | |||| || ||| || || || || Sbjct 317267 CTTATCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGT 317326 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || ||||| |||| |||||| Sbjct 317327 GATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 >seq1955 Length=526780 Score = 118 bits (130), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || || || |||||||| |||||||||||||| | | ||| | Sbjct 128529 GAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACG 128470 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || || ||||| || | |||||| || | | ||| || Sbjct 128469 ACCGTCCTCGAGCTGCTTT--CCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCC 128412 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || ||||| ||||| | || | |||| || ||| || || || Sbjct 128411 TCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGG 128352 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||||||||| ||||| | |||||| Sbjct 128351 GTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||| ||||||||||||||||||| | || | ||||||||| | Sbjct 128745 CAAG-TGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCTTCGA 128687 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| | | ||||||||| | | |||||| ||||| ||||||| Sbjct 128686 GCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGAA 128627 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | |||| || ||| ||||| | |||||||| |||| Sbjct 128626 TCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTCTTGC 128567 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||| | |||||| Sbjct 128566 CGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| |||||||| ||||| || | | || | ||||| Sbjct 128013 AGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCC 127954 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || |||||||| | || ||||| | | || |||||||| || Sbjct 127953 TCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCC 127894 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | |||| ||| ||| || || | || || || Sbjct 127893 TGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTC 127834 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || |||| |||||| Sbjct 127833 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| || || | ||||| || | Sbjct 128237 CAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGA 128178 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | ||||| || | | || |||||||| || |||| Sbjct 128177 GCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAA 128118 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | |||| ||| || || || ||||| ||||| || | Sbjct 128117 TCTTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCC 128058 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 128057 CAGTCAAGGTCTTGACGAAGATTTGCAT 128030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153790272425615