Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1955 176 9e-39 seq2 172 1e-37 seq535 109 1e-18 seq1724 100 6e-16 seq1901 95.1 3e-14 seq1345 86.0 1e-11 >seq1955 Length=526780 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| ||||| || || || | || || |||||||| |||||||| | | Sbjct 128028 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAA 127969 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| |||||||| || |||||||| | |||||||||||| ||| Sbjct 127968 AGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGA 127909 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || || | ||||| |||||||||| || || Sbjct 127908 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACC 127849 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| | ||||| || || |||||||| Sbjct 127848 TCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || ||||| | || ||||| || || |||||||| | Sbjct 127801 ACCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGA 127742 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || |||||| || Sbjct 127741 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGG 127682 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || ||| ||||||| ||||| || | ||||| Sbjct 127681 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGAC 127622 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| ||||| || || | |||||| || || || ||||| Sbjct 127621 TTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 170 bits (188), Expect = 4e-37 Identities = 153/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | | ||||||||||||||| || || || |||||||| Sbjct 128221 TTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 128162 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | ||||| || || ||||| || |||||||| || ||||| || || ||| | Sbjct 128161 GATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGACGTT 128102 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || |||||||||| |||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 128101 GTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTCTTGAC 128042 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 128041 GAAGATTTGCAT 128030 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | |||| || | ||||| || |||||||||||||| || | | Sbjct 128765 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAA 128706 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || |||||||||||||| || || ||||| || Sbjct 128705 AGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGG 128646 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||| || || ||| |||| || |||||||| | |||||| Sbjct 128645 ATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACT 128586 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 128585 TCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| || || |||| | ||| ||||| ||||| ||||| || || || || Sbjct 127481 TCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAA 127422 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| ||||| ||||| |||||||||||||||||||| || || ||| | Sbjct 127421 ATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG 127362 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || ||||| | ||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 127361 TCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACA 127302 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 127301 AAGATTTGCAT 127291 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | || ||||| ||||||||||| || | Sbjct 128538 ACCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 128479 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || |||||||| | ||| || || || || Sbjct 128478 GAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGG 128419 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| ||||| || || || ||| | || || ||||| || | ||||| Sbjct 128418 GATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGAC 128359 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | |||||| ||||| |||||||| Sbjct 128358 CTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 >seq2 Length=528078 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || ||||| ||||| || |||||||| |||||||||| Sbjct 317366 ACCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGA 317425 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||| ||||| ||||| |||||||| ||||| | || || |||||| || Sbjct 317426 CAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGG 317485 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| ||||| || | || || || || || | |||||| Sbjct 317486 GATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGAC 317545 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| || ||||||||||| ||||| |||||||| Sbjct 317546 CTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| || ||||||| || |||||||| || || || || ||||| |||||| Sbjct 317694 TCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCAGCAAAG 317753 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| ||||| |||||||| || || |||||||| || || | Sbjct 317754 ATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTTGACATTG 317813 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | |||||| ||||| || || ||||| |||||||||||||| || Sbjct 317814 TCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTCTTGACA 317873 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 317874 AAGATCTGCATT 317885 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || ||||||||||| || || || | | Sbjct 317139 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAA 317198 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || |||||||| || ||||||||| || Sbjct 317199 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGG 317258 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || |||||||| || || ||| | || || ||||| || | ||||| Sbjct 317259 ATGCCTTCCTTATCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACC 317318 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | || || || || |||||||| Sbjct 317319 TCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 134 bits (148), Expect = 3e-26 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 282886 GAAGTACC-AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCC 282943 || ||||| ||||| || ||| ||| ||||| ||||| || || | |||| || | || Sbjct 317948 GACGTACCTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAG-GTTCTCCC 318006 Query 282944 ATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTT 283003 ||||| || ||||| || || || || | || |||||||| ||||| |||||||| Sbjct 318007 GTCCTCGAGCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTT 318066 Query 283004 GTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGAT 283063 ||||| || || || || || | ||||| ||||| |||| || || ||||| ||||| Sbjct 318067 ATCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGAT 318126 Query 283064 CGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 |||||| || || | ||| || || |||||||||||| || Sbjct 318127 CGTCTTTCCGGTGAGAGTTTTGACAAATATCTGCATTCTC 318166 >seq535 Length=83846 Score = 109 bits (120), Expect = 1e-18 Identities = 222/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 43974 TCGGATT-TGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAA 44032 || |||| | |||||| || || || ||||||||||||||||| |||| ||||| Sbjct 3028 TCCGATTCTACCAAGCCTCCACGTCCGAGTTGTACGGAAAGGTCGTTGAGACGCCTCAGT 3087 Query 44033 CAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATT 44092 | |||| ||||| || || || || ||||| |||||||| ||||| ||||| || | Sbjct 3088 CGGAAACCACTCCCTTCTACCCTCGCTCGCCATACGGTGTGGCCAAGCTCTATGCGTACT 3147 Query 44093 GGATTTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCA 44152 |||| || ||||||||| ||||||| |||| || || || ||| | |||| Sbjct 3148 GGATCACCGTCAACTATCGCGAGGCGTATGGCATGTACGCGTGCAACGGGATCTTGTTCA 3207 Query 44153 ATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTG 44212 | ||||| || || | || | ||| ||||| || || || | ||||||| Sbjct 3208 ACCACGAGAGCCCGCGTCGTGGGCGAACGTTTGTGACGCGCAAGATTTCCCGTGCGGTTG 3267 Query 44213 CGAATATTTTCAACGGGACAG-AAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGA 44271 | | | |||| ||| || | | ||| |||| || || ||| | ||| || | | Sbjct 3268 CTGAGA-TTTCGTTGGGCAAGCAGCAGTGCTTGTACCTCGGTAACTTGGACGCTCAGCGT 3326 Query 44272 GATTGGGGATATGCCTTGGATTATGT 44297 |||||||| ||||| |||||| || Sbjct 3327 GATTGGGGCCATGCCAAGGATTACGT 3352 >seq1724 Length=14637 Score = 100 bits (110), Expect = 6e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || ||||||||||| ||||| ||||| || || || | |||||||| || |||| ||| Sbjct 11432 GGGATACCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATAGTATCGGAAGATTCC 11491 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| ||||| | || || |||||||||||||| Sbjct 11492 ACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCAT 11541 >seq1901 Length=11604 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || |||||||| ||||| ||||| || || || | |||||||| || |||| ||| Sbjct 8407 GGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATAGTATCGGAAGATTCC 8466 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| ||||| | || || |||||||||||||| Sbjct 8467 ACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCAT 8516 >seq1345 Length=198670 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/151 (75%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 109937 TTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGTGA 109996 |||| ||| |||||||||||| || |||||||| | || |||||| | ||||| Sbjct 129843 TTGCGACACTGTCAAATTGCGGGGACGTCCTAAAGCTTTTGCGACCAAGCAT--TTGTGG 129786 Query 109997 AAGCATCAGC-TGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCAC 110053 || || || |||||||| || || || ||||||||||||| | || | |||| || Sbjct 129785 AAACACAAGTGTGGCCGAGTTAATAGCCCT-GGGTATGGTAAAACTGCAAAAGATGTTAC 129727 Query 110054 AATGGGCAATCCGCAGCCAAGCCTCTAAAGG 110084 ||||| |||||||||||||| | |||| || Sbjct 129726 AATGGATAATCCGCAGCCAAGTC-CTAAGGG 129697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046711505570510