Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1955 159 2e-34 seq2 122 6e-23 >seq1955 Length=526780 Score = 159 bits (176), Expect = 2e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| |||||| |||||||||||||||||||||||||||| || |||| | || Sbjct 128751 CAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATC 128692 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| |||||||||||||| |||||||| || | || | || ||||| || Sbjct 128691 TTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATC 128632 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| ||||| | | || ||||| | ||| || || |||| |||||| || Sbjct 128631 TTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGT 128572 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || ||||| ||||| || ||||| Sbjct 128571 CTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||| || |||||||||||||| | ||| || |||| || Sbjct 128519 ACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCG 128460 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||||||| | ||| | || ||||| ||| Sbjct 128459 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGG 128400 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || ||| ||| | | | || ||||| | ||| || ||||| | || || ||||| Sbjct 128399 ATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTG 128340 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| ||||| ||||| || |||||| Sbjct 128339 CCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 Score = 120 bits (132), Expect = 2e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 |||||||| || ||||| ||||||||||| |||| | ||| | || || ||| Sbjct 128235 AGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGC 128176 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||||||||| | || |||||||| | ||| | |||||||| ||| ||| Sbjct 128175 TGCTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATC 128116 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | | | |||||||| | ||||| ||||| | || || ||||| || Sbjct 128115 TTAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCA 128056 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||| |||||||||||||| Sbjct 128055 GTCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||||||||| ||||| || | || || | || || Sbjct 128010 ACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCG 127951 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || |||||||| | ||| || || || | ||| | |||||||| ||| Sbjct 127950 AGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 127891 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | || || ||||||| ||| || ||||| Sbjct 127890 ATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTG 127831 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| || ||||| ||||| Sbjct 127830 CCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || || ||||| || | ||| ||| | || || |||||||| || ||||| Sbjct 127765 CTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 127706 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | |||||||| || | ||| | |||||||| ||| ||||| ||| | | Sbjct 127705 GATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 127646 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| || || || || | || || ||||| || || || ||||| || Sbjct 127645 ATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGAC 127586 Query 44326 GAAGATTTGCATG 44338 |||||||||||| Sbjct 127585 AAAGATTTGCATG 127573 >seq2 Length=528078 Score = 122 bits (134), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 |||||||| ||| |||||| ||||| || || || | ||| ||| |||| || ||| Sbjct 317679 AGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGC 317738 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 |||||||| |||||||| | |||||||| || | ||| | || ||||| ||| ||| Sbjct 317739 TGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATC 317798 Query 44252 TTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 || ||| || ||| | || ||||||| ||||| ||||| | ||||| ||||| | Sbjct 317799 TTTGCCTTGACATTGT--CGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGC 317856 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | ||||| || ||||| ||||| Sbjct 317857 CCGTCAAAGTCTTGACAAAGATCTGCAT 317884 Score = 111 bits (122), Expect = 1e-19 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||| ||||| || | | | | |||| || || ||||||||||| || Sbjct 317402 CTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAA 317461 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAA 44262 ||| | |||||||| || | ||| | |||||||| ||| |||||| |||| || Sbjct 317462 GATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTC-GCTTTGACAT 317520 Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 ||| | ||||| || | ||||| ||||| | ||||| |||||||| || | ||||| Sbjct 317521 TGT--CAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTT 317578 Query 44323 CACGAAGATTTGCATG 44338 |||||||| |||||| Sbjct 317579 GACGAAGATCTGCATG 317594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359981340054105