Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 167 6e-36 seq1955 156 1e-32 seq1901 86.0 2e-11 seq1724 86.0 2e-11 seq258 84.2 5e-11 >seq2 Length=528078 Score = 167 bits (184), Expect = 6e-36 Identities = 161/204 (79%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||||||||| ||||| |||||||||||||||||||| || ||| Sbjct 318159 CAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTCTGAC 318100 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || ||||| || || || ||||| ||||| ||||| || Sbjct 318099 ACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCAACAG 318040 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || || ||||| || ||||||||||| || || || || |||| ||||||||||| | Sbjct 318039 CGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAAC-CTTGTCCGATTATAACAT 317981 Query 178103 CCAAAAAGAATCAACACTGCATCT 178126 ||||| ||||| || ||||||| Sbjct 317980 TCAAAAGGAATCCACCTTGCATCT 317957 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||| || || ||||||||||||||||| || ||| ||| Sbjct 317362 CAGATCTTTGTGAAAACGCTCACCGGGAAGACGATCACCCTCGAGGTCGAGTCCTCTGAC 317303 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| ||||| || ||||| ||||| || ||||| || Sbjct 317302 ACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAAGGCATCCCACCTGACCAACAG 317243 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || || || | |||||| | |||||||| || Sbjct 317242 CGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCGGATTATAATATC 317183 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| ||||| || || |||| Sbjct 317182 CAAAAAGAGTCAACCCTCCA-CTTG 317159 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || || || || ||||| ||| || || Sbjct 317590 CAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTCTGAT 317531 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| |||||||||||||| ||||| |||||||| |||||||| Sbjct 317530 ACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAGCAG 317471 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || || || || || ||||| | | || || || || Sbjct 317470 CGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTACAATATC 317411 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || |||||||||| Sbjct 317410 CAAAAGGAGTCGACGTTGCATCTTGT 317385 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || || || |||||||| ||| || ||| Sbjct 317881 CAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTCCGAC 317822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||| || || || || ||||| |||||||| Sbjct 317821 ACTATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGGATTCCTCCTGACCAGCAG 317762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||||||||| || | || || | || ||||| || Sbjct 317761 CGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGCCGCACCCTCTCTGACTATAATATC 317702 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 317701 CAGAAGGAGTCCACCCTTCACCTTG 317677 >seq1955 Length=526780 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || || || |||||||||||||| || ||| ||| Sbjct 128314 CAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGAC 128373 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || |||||||| || || |||||||| || ||||| Sbjct 128374 ACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCAGCAG 128433 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| || || | ||||| | ||||| ||| || Sbjct 128434 CGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAACATC 128493 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 128494 CAGAAAGAGTCGACCCTCCACCTTGT 128519 Score = 149 bits (164), Expect = 2e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||| |||||||| ||| || ||| Sbjct 128033 CAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCGGAC 128092 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| ||||| || ||||| || |||||| Sbjct 128093 ACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAGCAA 128152 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | |||| || ||| || Sbjct 128153 CGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAACATC 128212 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 128213 CAGAAGGAATCGACCCTTCACCTTG 128237 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || || || | || || || ||| ||| Sbjct 128542 CAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCGGAC 128601 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||| || || || |||||||| || |||||||| Sbjct 128602 ACGATTGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCAGCAG 128661 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| || |||||||||||||| | || ||| ||||||| ||| || Sbjct 128662 CGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAACATC 128721 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 128722 CAAAAGGA 128729 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||||||| | | ||||| || || || || | || || || || ||||||||||||| Sbjct 127281 AGGTTAAA-TCATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGG 127339 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || || |||||||| |||||||| ||||| || ||||| || || || | Sbjct 127340 TCGAGTCGTCGGATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTC 127399 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 |||| ||||||||||| || || ||||| || || || ||||| || || | || | Sbjct 127400 CTCCCGACCAGCAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGT 127459 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| |||| || || || || || || |||| Sbjct 127460 CTGATTATAATATCCAGAAGGAGTCCACTCTCCACCTTG 127498 >seq1901 Length=11604 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || ||||||||||| ||||||||| || || Sbjct 8513 CAGATATTCGTCAAAACCCTAACGGGGAAGACGATCACCCTTGAGGTGGAATCTTCCGAT 8454 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| || || || || ||||| || |||||||| Sbjct 8453 ACTATCGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCCCCCGACCAGCAG 8394 Query 178044 CG 178045 || Sbjct 8393 CG 8392 >seq1724 Length=14637 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || ||||||||||| ||||||||| || || Sbjct 11538 CAGATATTCGTCAAAACCCTAACGGGGAAGACGATCACCCTTGAGGTGGAATCTTCCGAT 11479 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| || || || || ||||| || |||||||| Sbjct 11478 ACTATCGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAGCAG 11419 Query 178044 CG 178045 || Sbjct 11418 CG 11417 >seq258 Length=89307 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 |||||| ||||||||||| ||||| || ||||| | | || || ||||| ||||| Sbjct 85610 GATTCAAGACAAAGAAGGTTTCCCTGTTCACGAGCAAAGGTTGATATTTGCCGGGAAACA 85669 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | | ||||| || | || || ||||| ||||| | ||||| ||| |||| || ||||| Sbjct 85670 GTTGGAAGACGGGCGAACGCTGGCCGACTATAATATTCAAAAGGAAACAACGCTCCATCT 85729 Query 178127 TGTTTTGAGACTCAGA 178142 ||| ||| ||| || Sbjct 85730 TGTCCAGAGTCTCCGA 85745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203699351905610