Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1955 140 3e-28 seq2 129 5e-25 seq1418 87.8 2e-12 seq1296 87.8 2e-12 >seq1955 Length=526780 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| || || ||||||||||| || ||||| || ||||| Sbjct 128766 GCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGA 128707 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || ||||||||||||||||| || |||| ||||| ||||| | || Sbjct 128706 AAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGG 128647 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| | | ||| | || || | ||| | | ||||| ||||| | Sbjct 128646 GATTCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGA 128588 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| || || || || || |||||||| |||||||||||||| Sbjct 128587 CTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||| |||||||| || ||||| ||| Sbjct 127800 CCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAG 127741 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || |||||||| ||||| | ||| Sbjct 127740 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGA 127681 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || || | ||| | | |||||| |||||| || Sbjct 127680 ATGCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGAC 127622 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || ||||| || || || |||||| Sbjct 127621 TTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATG 127573 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || || ||| ||||| ||||| || || ||| Sbjct 128537 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAG 128478 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || || || || || ||||| || || | || Sbjct 128477 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 128418 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || |||| || | ||| | | | ||||| ||||| || Sbjct 128417 ATGCCCTCCTTGTCC-TGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGAC 128359 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || ||||| || ||||| ||||||||||||||| Sbjct 128358 CTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| |||||||| | ||||| | || ||||||||||||||||| || Sbjct 128220 TCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 128161 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || ||||| || || || | |||| || ||||||||| ||| | || || | ||| Sbjct 128160 ATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTGACGTT 128102 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| || || ||||| | || || || || || |||| ||||| || Sbjct 128101 GTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTCTTGAC 128042 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 128041 GAAGATTTGCAT 128030 >seq2 Length=528078 Score = 129 bits (142), Expect = 5e-25 Identities = 163/219 (74%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 41648 CGTAAC--ACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||||| |||| | || || ||| ||||||||| || |||||||| ||||||||||| Sbjct 317667 CGTAACTTACCAAGGTGAAGGGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGG 317726 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||||||||| || || || || || ||||| ||||| | |||| | |||| Sbjct 317727 CCGTCTTCGAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCC 317786 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | || | | | ||||||| ||| || ||||| | || Sbjct 317787 TTATCC-TGAATCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGT 317845 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||||| ||||| || || |||||||| Sbjct 317846 AATGGTCTTGCCCGTCAAAGTCTTGACAAAGATCTGCAT 317884 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||||| ||| ||||| ||||||||||| ||||| | ||| | | |||| |||||| Sbjct 317957 AGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGC 318016 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 || || || ||||| || |||||||||||||| | |||| | |||||| | | ||| | Sbjct 318017 TGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTAT-CTTGAAT 318075 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||| || | || | | | ||||| ||||||||||| | || ||||| || || Sbjct 318076 TTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCC 318135 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || |||||||| Sbjct 318136 GGTGAGAGTTTTGACAAATATCTGCAT 318162 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||| || || || ||||| || || Sbjct 317139 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAA 317198 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 317199 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGG 317258 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| ||| ||| || |||| ||| | | | ||||| ||||| || Sbjct 317259 ATGCCTTCCTTATCCTGGATCTTCGCCTTC-ACGTTGTCAATGGTGTCAGAGGACTCGAC 317317 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || || || ||||| || || || |||||||| Sbjct 317318 CTCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 >seq1418 Length=35037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || || ||||||||| ||||| ||||| ||||| || || |||| || Sbjct 21738 CACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCCTC 21797 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 |||||||||||| || || |||||||| || ||||| | ||| | ||| Sbjct 21798 GAGCTGCTTGCCCGCAAAGATCAGGCGTTGCTGGTCGGGGGGGATGCT 21845 >seq1296 Length=48495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || || ||||||||| ||||| ||||| ||||| || || |||| || Sbjct 4825 CACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGTCCGTCCTC 4884 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 |||||||||||| || || |||||||| || ||||| | ||| | ||| Sbjct 4885 GAGCTGCTTGCCCGCAAAGATCAGGCGTTGCTGGTCGGGGGGGATGCT 4932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292066778000