Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2220 138 1e-27 >seq2220 Length=173857 Score = 138 bits (152), Expect = 1e-27 Identities = 380/581 (65%), Gaps = 5/581 (1%) Strand=Plus/Minus Query 16941 GTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGA 17000 |||| ||||| |||| | ||||| || || || || | |||||||| | |||| Sbjct 65297 GTTTGAGATGGCTAAATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGA 65238 Query 17001 TAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCG 17060 | |||||||| || || | | || |||||| ||| || || || | ||| ||||| | Sbjct 65237 TGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAG 65178 Query 17061 CGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGG 17120 ||||| || || |||||||| || ||||| || | ||||| || | || ||| | Sbjct 65177 ATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAG 65118 Query 17121 CGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGC 17180 || | || || | ||||| | |||||| | |||| || || || |||| | | Sbjct 65117 CGAATGTGGCATGTTTGTCAGATATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGG 65058 Query 17181 AATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACG 17240 || | ||||| || | || | || || | | || | || | Sbjct 65057 CGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGG 64998 Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 | ||||| || || || | ||||| || |||||||| || || || || |||| Sbjct 64997 TGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGT 64938 Query 17301 AAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGT 17360 |||||||||| ||||| || || ||||| || | || || || | ||||| || | Sbjct 64937 AAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCAT 64878 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT 17420 | || ||||||||| || ||||| || || || | ||| ||||||| ||| | Sbjct 64877 TGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCAT 64818 Query 17421 CCGGTGTAAGAACGCG----CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476 | || || || | |||||| | | || |||| | ||||| |||||||| | Sbjct 64817 TTGAAGTTAG-GCGGGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCG 64759 Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 ||||||||| |||| | || ||||| ||||| |||||||| Sbjct 64758 GTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 Score = 136 bits (150), Expect = 4e-27 Identities = 283/418 (68%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 ||||| || | |||||| || ||||| || || || | || ||||| || |||||| Sbjct 63022 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACCGCGTTTC 63081 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | || || || ||||| ||||| ||||||||||||| || || Sbjct 63082 TTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAT 63141 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | |||||||| || | || | || | | ||||| ||| | |||| ||| Sbjct 63142 GCTACCAATCGTTCAGCAAAGGTGGAACGTTGATCAGTTATCCACTTCAGTGCCCAGTCG 63201 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC--CTTAAATAATTTCTCTTTTTCCT 17222 || || |||| | ||| || || || ||||| | ||| ||| | || | || Sbjct 63202 GCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGCATCGAAAAGGTATTCGCGTTGT-CT 63260 Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 | | || | ||||| || |||||||| || ||| | || ||||| || ||||||| Sbjct 63261 G-GGATCCTTGATATAGGTGTCGATGAGGAGTGAGTAGGTCTCAGAGTGAATATTCTCCA 63319 Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATC 17342 | || || || ||||| ||||| |||||||| || ||||| || | |||| | Sbjct 63320 TCATAATTTGGAAACCGTAGAAGCACCGGGCTTCGGCGGCCTGAACCTCATTGGAGAAAC 63379 Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATG 17400 | || | || ||||| || |||||||| ||| || ||||| || || | || ||| Sbjct 63380 GCTCAACGAGGTTTTCATTGACGATGCCATCGGATGCAGCGAAGAAGGCGAGTACATG 63437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517502624307240