Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 109 6e-19
>seq2220
Length=173857
Score = 109 bits (120), Expect = 6e-19
Identities = 368/571 (64%), Gaps = 9/571 (2%)
Strand=Plus/Minus
Query 16191 TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGG 16250
|||| | ||||| || ||||| || | || ||||| | ||||| |||||||| |
Sbjct 65285 TAAATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTG 65226
Query 16251 AAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACC 16310
| |||| | |||||||| ||| || || || | ||||||||| | || || || |
Sbjct 65225 AGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAAC 65166
Query 16311 CCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT 16370
| |||||||| || |||||||||| |||||||| | || ||| ||| | || ||||
Sbjct 65165 CGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCAT 65106
Query 16371 CTTTATTACGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCG 16427
||| | | |||||| ||| |||| || || || | || | || |
Sbjct 65105 GTTTGTCAGATATCCATC---GTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGG 65049
Query 16428 TTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCA 16487
||||| || | || | || || | | ||| | || || || || |
Sbjct 65048 ACTCTATTGCATCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAA 64989
Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547
| | || | || || || |||||||| || || || || || || |||||||
Sbjct 64988 GGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATC 64929
Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607
|||| || || || || || || |||| || || |||| |||||||| || || |
Sbjct 64928 GAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGC 64869
Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667
|||| |||||| || || || || | || ||||||| ||| | || || |
Sbjct 64868 CGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAGTTA 64809
Query 16668 ---GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724
| ||| ||| || | | || |||| | ||||| |||||| | ||||||||
Sbjct 64808 GGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAG 64749
Query 16725 TAGCCACTGCCTTTTTATACATTTTCCAAAT 16755
|||| | || ||||| ||||| ||||||||
Sbjct 64748 AAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511371933426760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |