Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2220 109 6e-19 >seq2220 Length=173857 Score = 109 bits (120), Expect = 6e-19 Identities = 368/571 (64%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 16191 TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGG 16250 |||| | ||||| || ||||| || | || ||||| | ||||| |||||||| | Sbjct 65285 TAAATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTG 65226 Query 16251 AAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACC 16310 | |||| | |||||||| ||| || || || | ||||||||| | || || || | Sbjct 65225 AGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAAC 65166 Query 16311 CCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT 16370 | |||||||| || |||||||||| |||||||| | || ||| ||| | || |||| Sbjct 65165 CGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCAT 65106 Query 16371 CTTTATTACGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCG 16427 ||| | | |||||| ||| |||| || || || | || | || | Sbjct 65105 GTTTGTCAGATATCCATC---GTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGG 65049 Query 16428 TTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCA 16487 ||||| || | || | || || | | ||| | || || || || | Sbjct 65048 ACTCTATTGCATCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAA 64989 Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 | | || | || || || |||||||| || || || || || || ||||||| Sbjct 64988 GGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATC 64929 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 |||| || || || || || || |||| || || |||| |||||||| || || | Sbjct 64928 GAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGC 64869 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 |||| |||||| || || || || | || ||||||| ||| | || || | Sbjct 64868 CGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAGTTA 64809 Query 16668 ---GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724 | ||| ||| || | | || |||| | ||||| |||||| | |||||||| Sbjct 64808 GGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAG 64749 Query 16725 TAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| | || ||||| ||||| |||||||| Sbjct 64748 AAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511371933426760