Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2220 277 2e-69 seq4212 120 3e-22 seq6278 93.3 4e-14 seq1236 91.5 2e-13 >seq2220 Length=173857 Score = 277 bits (306), Expect = 2e-69 Identities = 406/571 (71%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| |||| || Sbjct 63557 ATATGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATCTC 63498 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || ||| |||||| | || | || |||||||||||||| ||||| Sbjct 63497 TCAAAAGACGTTCATGACTGGACCAACCGTCTCAATGACAACGAGCGCCACTTCATATCA 63438 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || ||||| ||||| || ||| ||||||||||| || || || || |||||| Sbjct 63437 CATGTACTCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTGAGCGT 63378 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | | ||||| |||| ||||| || |||||||||||||| || || || ||| Sbjct 63377 TTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTATGATG 63318 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 ||||| | ||||| || | || || |||||||||||| || | | || || Sbjct 63317 GAGAATATTCACTCTGAGACCTACTCACTCCTCATCGACACCTATAT-CAAGGATCCCAG 63259 Query 116933 GAGAAGC---TCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 | || | | || || | ||||| ||||| || || ||||| || |||||| Sbjct 63258 ACAACGCGAATACCTT--TTCGATGCCATGGAGACCATTCCCTGCGTTAAGCGCAAGGCC 63201 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| ||| ||||| | | | || |||| | || || |||| || Sbjct 63200 GACTGGGCACTGAAGTGGATAACTGATCAACGTTCCACCTTTGCTGAACGATTGGTAGCA 63141 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| ||||||||||| ||||||| || ||| || || |||| || ||||||||| Sbjct 63140 TTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGGCTCAAG 63081 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 |||||||| |||||||| || || |||||| ||||||||||||| | | || |||||| Sbjct 63080 AAACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGATGAGGGT 63021 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| ||||||||| || ||||| |||| Sbjct 63020 ATGCACACCGACTTTGCTTGCTTGCTCTTCA 62990 Score = 194 bits (214), Expect = 2e-44 Identities = 387/567 (68%), Gaps = 21/567 (4%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||||||| |||||||| || || ||||||| ||| || |||| || Sbjct 64718 ATTTGGAACATGTACAAAAAAGCCGAGGCTTCTTTTTGGACCGCCGAAGAAATGGATCTC 64777 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAAC-GAGCGCCATTTCATCAA 116751 |||| |||| | ||||||| | ||| | ||| ||| || || ||||||||| Sbjct 64778 TCCACTGACATTATCGACTGGAATACCCGCCT-AACTTCAAATGAACGTCATTTCATCTC 64836 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 || || | || || ||||| || ||||||||| ||||| ||||||||||| ||||| Sbjct 64837 ACATGTTTTAGCTTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGAGCG 64896 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 || | | ||||| ||| | || || || || ||||| ||||| || || ||| || Sbjct 64897 GTTTTCGAACGAGGTTCAGATTGCAGAAGCTCGATGCTTTTACGGGTTCCAAATCATGAT 64956 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC--G 116929 |||||| | || || || | ||||| ||| ||||||| | ||| || | Sbjct 64957 CGAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACA--------CCCTCATCAAG 65008 Query 116930 GAGG---AGAAGC-TCCGTT--TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG 116983 || | | ||| | ||| | || | || || ||| | || || ||| || Sbjct 65009 GATGTCAATGAGCGGCAGTTTCTTTTCGATGCAATAGAGTCCATACCCGCCGTTAAGCGC 65068 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 ||||| || |||||| | || ||||| | | || | | ||| | |||| || || Sbjct 65069 AAGGCAGACTGGGCGTTACGATGGATATCTGACAAACATGCCACATTCGCTACCCGACTA 65128 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || || || || |||||| |||||||||| || |||||| | ||||| ||| Sbjct 65129 GTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGG 65188 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||| || || || | ||||| ||||| ||||| ||||| |||||| | ||| Sbjct 65189 CTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGAC 65248 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGT 117190 ||||| |||| |||||||| ||| Sbjct 65249 GAGGGGATGCACACAGACTTTGCTTGT 65275 >seq4212 Length=20478 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || ||||| | || || || | | Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || | ||||| Sbjct 1973 GACACCATAGACAACG-TGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCA 2031 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 2032 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAA 2091 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 2092 CATTCAGAAGGAGTCCACTCTACACCTCGT 2121 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| |||||||| || | || || || | | Sbjct 2141 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCA 2200 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||| ||||| ||||| |||| ||| Sbjct 2201 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 2260 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || || | ||||| || |||||||| Sbjct 2261 CAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAAT 2320 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| || || || || || || Sbjct 2321 ATCCAGAAGGAGAGCACACTCCACCTTGTCTTACG 2355 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || |||||||||||||||||||| | || || || | | Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| || || | ||||| Sbjct 1745 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 1804 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || || | || || || ||| || ||| Sbjct 1805 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAAC 1864 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| | || || || || || Sbjct 1865 ATCCAGAAAGAGTCTACCCTTCACCTCGT 1893 >seq6278 Length=62549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 || ||| | ||||| || || ||||||| ||| || || || || || || | |||||| Sbjct 46724 ATTCCCCCTGACCAACAGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACC 46665 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| |||||||||||||||||||||| ||||||| || || || Sbjct 46664 CTCAGCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTTGT 46621 >seq1236 Length=761 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | ||||| || || ||||||| ||| ||||| |||||||| || | ||||| Sbjct 283 ATCCCACCCGACCAACAGCGCCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACG 224 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||| |||||||||||||||||| | || || || || || ||||| Sbjct 223 CTCTCCGATTACAACATCCAGAAGGAGTCTACCCTTCACCTTGTCTTGCG 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515176417485680