Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4212 120 3e-22 seq6241 96.9 3e-15 >seq4212 Length=20478 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||| || ||||| |||||| || || || |||||| ||||| || ||| Sbjct 1881 GTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCAAGCTGCTTGCCA 1822 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| ||||| || || ||||| || ||||||||||| || || || Sbjct 1821 GCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTT 1762 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||| ||||| | || | |||||||| || || || Sbjct 1761 ACATTGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTC 1702 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || ||||| ||||||||| || Sbjct 1701 TTGACAAAGATCTGCATGCCT 1681 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || | ||||| ||| ||| || || || ||||| || || ||||| |||| Sbjct 2352 AAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCC 2293 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || ||||| ||||| || |||| |||||||||||||| || || || ||||||||||| Sbjct 2292 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 2233 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || || || | |||| |||||| | ||| ||||| | || | ||| Sbjct 2232 TGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTT 2173 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || |||||||||||| Sbjct 2172 TTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| | ||| || || |||||||| || || Sbjct 2109 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGCTTGCCG 2050 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| |||||||| ||||||||||||||| || || || Sbjct 2049 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 1990 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| || || | || | ||| || || || || || Sbjct 1989 ACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGTGAGGGTC 1930 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 1929 TTGACGAAGATCTGCAT 1913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| |||||||| | |||||||| ||||| |||||||||||| Sbjct 1683 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAG 1624 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| || || || || ||| |||||||||||||||| ||||| || Sbjct 1623 AGTGTCCGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGGA 1564 Query 118632 AT 118633 || Sbjct 1563 AT 1562 >seq6241 Length=43505 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||| |||||||| ||||| | ||| || ||||||| Sbjct 25917 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTACGGCCATCCTCG 25858 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||||| ||||| ||| |||| ||||||||||| ||||| || |||| Sbjct 25857 AGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGC 25812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433795276412956