Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2220 127 2e-24 seq4212 109 5e-19 >seq2220 Length=173857 Score = 127 bits (140), Expect = 2e-24 Identities = 370/567 (65%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||||||||||||||||| || || || || |||||||||| ||||||| | || || Sbjct 64718 ATTTGGAACATGTACAAAAAAGCCGAGGCTTCTTTTTGGACCGCCGAAGAAATGGATCTC 64777 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATC---TGAGAGAAATTTTATTAAA 57686 || | || | | ||| ||| || ||| | | || ||| | |||| || | Sbjct 64778 TCCACTGACATTATCGACTGGAATACCCGCCTAACTTCAAATGAACGTCATTTCATCTCA 64837 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || || || || ||||| |||||||| || || || || |||||| |||| || | Sbjct 64838 CATGTTTTAGCTTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGAGCGG 64897 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| | || || || | | || || ||||||||||||| || ||| | || Sbjct 64898 TTTTCGAACGAGGTTCAGATTGCAGAAGCTCGATGCTTTTACGGGTTCCAAATCATGATC 64957 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | ||||| || | ||||| || || ||||| || | | ||||| | | Sbjct 64958 GAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGATGTCAAT 65017 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCA 57923 ||| | || ||| | || || || | || ||||| || ||| |||||| Sbjct 65018 GAGCGGCAGTTTCTTTTCGATGCAATAGAGTCCATACCCGC---CGTTAAGCGCAAGGCA 65074 Query 57924 GAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 || ||| | | ||||||| | || | ||||| ||||| | ||| | Sbjct 65075 GACTGGGCGTTACGATGGATATCTGACAAAC----ATGCCACATTCGCTACCCGACTAGT 65130 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || || || || || || || |||||||| || || || | ||||| ||| | Sbjct 65131 TGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCT 65190 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 || || || || ||||||| ||||| | || ||||| | || || ||||| Sbjct 65191 CAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGA 65250 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| | || || || ||||| || || Sbjct 65251 GGGGATGCACACAGACTTTGCTTGTCT 65277 Score = 109 bits (120), Expect = 5e-19 Identities = 370/567 (65%), Gaps = 21/567 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || ||||| || ||||| | || || | || || Sbjct 63557 ATATGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATCTC 63498 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || | || ||| || |||| || ||| | | || || | Sbjct 63497 TCAAAAGACGTTCATGACTGGACCAACCGTCTCAATGACAACGAGCGCCACTTCATATCA 63438 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | || || ||||| ||||||||||| || || || || || | || || | Sbjct 63437 CATGTACTCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTGAGCGT 63378 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | || || | ||||| ||||| || ||| | || Sbjct 63377 TTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTATGATG 63318 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CA-A 57862 || || | || || || | || || || |||||||| || || | ||||| || | Sbjct 63317 GAGAATATTCACTCTGAGACCTACTCACTCCTCATCGACACCTATATCAAGGATCCCAGA 63258 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAG---A 57918 | ||| ||| || || ||| | || || || || || ||| ||| | ||| | Sbjct 63257 CAACGCGAA---TAC-CTTTTCGATGCCATGGAGACCATTCCCTGCGTT----AAGCGCA 63206 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTA 57977 |||| || ||| || | || ||||||| | | ||| |||| || || || | | Sbjct 63205 AGGCCGACTGGGCACTGAAGTGGATAACT-GATCAACGTTCCACCTTTGCTGAACGATTG 63147 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || ||||| |||||||| ||||| ||||| || ||| |||||| | || || ||| Sbjct 63146 GTAGCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGG 63087 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||||||||| || ||||| || || || || ||||||| | || || || Sbjct 63086 CTCAAGAAACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGAT 63027 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGC 58124 |||||| | || || || ||||| ||| Sbjct 63026 GAGGGTATGCACACCGACTTTGCTTGC 63000 >seq4212 Length=20478 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || |||||||| ||||| | || || || |||| Sbjct 1684 CATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTC 1743 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || || ||||||||| || | || || ||||| Sbjct 1744 TGACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCA 1803 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || ||||||||||| ||| | || || | || || ||||||||| Sbjct 1804 ACAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAA 1863 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| || || ||||| || || ||| | || | ||||||| Sbjct 1864 CATCCAGAAAGAGTCTACCCTTCACCTCGTTCTTCGTCTTCGTGGCGGTA 1913 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || |||||||| | || || || |||| Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| ||| | || ||||||||| Sbjct 1973 GACACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 2032 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | |||||| | ||| | ||| || ||| Sbjct 2033 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAAC 2092 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || ||||| || || || ||| | || | ||||| Sbjct 2093 ATTCAGAAGGAGTCCACTCTACACCTCGTCCTTCGTCTTCGTGGCGG 2139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445729384672560