Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2220 165 1e-35 seq4642 95.1 2e-14 >seq2220 Length=173857 Score = 165 bits (182), Expect = 1e-35 Identities = 363/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| |||||||| | ||| || | |||||| || || | ||| || ||||| | || Sbjct 65260 GTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCC 65201 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||||||| ||||| ||||| || ||||| || |||||||||||||| || || || || Sbjct 65200 ACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGC 65141 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGC 33772 |||||| |||| |||| | | ||| ||||| |||||| | || Sbjct 65140 AGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGC 65081 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| || ||||| || || || || | ||||| |||| || ||| | | Sbjct 65080 CCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCG 65021 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||||| ||| || | || ||||| | || ||| | || ||||| ||||| Sbjct 65020 CTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTT 64961 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || || || || ||||| || |||| ||| || | |||||| || || | | Sbjct 64960 CTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGA 64901 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 ||| || || | | ||| ||||| ||||| || || || || || || || || || Sbjct 64900 AAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAAC 64841 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 34069 |||| || |||| ||| | || |||| | ||||||| || | || || | Sbjct 64840 ATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGT 64781 Query 34070 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 34129 || | ||||| |||||| | |||||||| || ||||| || ||||| ||||| ||||| Sbjct 64780 GGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCA 64721 Query 34130 GAT 34132 || Sbjct 64720 AAT 64718 >seq4642 Length=14046 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA---GCTAGAC 63647 ||||||||||| || |||||| ||||| |||| || | || || ||| Sbjct 10242 GTGTCATAGATACCCTCTATGGAGTCATCTTTCATACAAACCAAGAAGCATGAGCTT--- 10298 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 | ||| || ||| ||| || |||||||||| || || || |||||||| || | | Sbjct 10299 AGTTGCGGATGAGGAGTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGT 10358 Query 63708 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63767 ||||| | || |||||||||||||| | ||| |||||| | || || || ||| Sbjct 10359 TCAGACATAAGGTTGTACGTCTCAATGACGCTGTCGATATCCTGCTTGTGGATGCCCACT 10418 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||||||||||| | |||||| ||||| | ||| Sbjct 10419 GCGACACGCATGATCATGTGTTGAGGACGTTC 10450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629765301521040